Hb_154471_010

Information

Type -
Description -
Location Contig154471: 3570-9047
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154471_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_003849_260 0.1867573647 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
3 Hb_005656_140 0.2054448053 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
4 Hb_131956_010 0.2124994494 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
5 Hb_001584_220 0.214975372 - - galactinol synthase [Manihot esculenta]
6 Hb_004800_190 0.2272012407 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
7 Hb_000359_110 0.2277206447 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
8 Hb_001225_090 0.2283748773 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
9 Hb_000836_120 0.228419835 - - syntaxin, putative [Ricinus communis]
10 Hb_002235_240 0.2284228755 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
11 Hb_002609_090 0.2304314802 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003633_140 0.232364052 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
13 Hb_001660_090 0.2346199269 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
14 Hb_011885_010 0.2401813296 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_129204_060 0.2403334696 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_000215_410 0.2456866928 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
17 Hb_001141_360 0.247304807 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
18 Hb_000488_020 0.2487066089 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
19 Hb_008064_010 0.2496192363 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
20 Hb_028795_010 0.2497066363 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_154471_010 Hb_154471_010 Hb_003849_260 Hb_003849_260 Hb_154471_010--Hb_003849_260 Hb_005656_140 Hb_005656_140 Hb_154471_010--Hb_005656_140 Hb_131956_010 Hb_131956_010 Hb_154471_010--Hb_131956_010 Hb_001584_220 Hb_001584_220 Hb_154471_010--Hb_001584_220 Hb_004800_190 Hb_004800_190 Hb_154471_010--Hb_004800_190 Hb_000359_110 Hb_000359_110 Hb_154471_010--Hb_000359_110 Hb_002235_240 Hb_002235_240 Hb_003849_260--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_003849_260--Hb_000836_120 Hb_001141_360 Hb_001141_360 Hb_003849_260--Hb_001141_360 Hb_003849_260--Hb_004800_190 Hb_003849_260--Hb_001584_220 Hb_002686_280 Hb_002686_280 Hb_003849_260--Hb_002686_280 Hb_003494_060 Hb_003494_060 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_009838_060 Hb_009838_060 Hb_005656_140--Hb_009838_060 Hb_129204_060 Hb_129204_060 Hb_005656_140--Hb_129204_060 Hb_005656_140--Hb_001141_360 Hb_005656_140--Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_022137_040 Hb_022137_040 Hb_131956_010--Hb_022137_040 Hb_131956_010--Hb_129204_060 Hb_131956_010--Hb_009838_060 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130 Hb_003633_140 Hb_003633_140 Hb_001584_220--Hb_003633_140 Hb_001999_250 Hb_001999_250 Hb_001584_220--Hb_001999_250 Hb_028795_010 Hb_028795_010 Hb_001584_220--Hb_028795_010 Hb_012226_010 Hb_012226_010 Hb_001584_220--Hb_012226_010 Hb_001584_220--Hb_001141_360 Hb_009897_020 Hb_009897_020 Hb_004800_190--Hb_009897_020 Hb_004800_190--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_004800_190--Hb_001865_060 Hb_162074_010 Hb_162074_010 Hb_004800_190--Hb_162074_010 Hb_004800_190--Hb_003494_060 Hb_144951_010 Hb_144951_010 Hb_000359_110--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_000359_110--Hb_005389_010 Hb_001514_040 Hb_001514_040 Hb_000359_110--Hb_001514_040 Hb_001922_160 Hb_001922_160 Hb_000359_110--Hb_001922_160 Hb_000184_080 Hb_000184_080 Hb_000359_110--Hb_000184_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172356 1.91576 0.0166541 0.076722 0.578843 0.200886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10186 0.120168 0.073709 0.241649 0

CAGE analysis