Hb_001584_220

Information

Type -
Description -
Location Contig1584: 136508-137932
Sequence    

Annotation

kegg
ID rcu:RCOM_1435920
description hypothetical protein
nr
ID AIE11286.1
description galactinol synthase [Manihot esculenta]
swissprot
ID C7G304
description Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1
trembl
ID A0A068J7T2
description Hexosyltransferase OS=Manihot esculenta GN=GolS5 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13982: 137463-138001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_220 0.0 - - galactinol synthase [Manihot esculenta]
2 Hb_003849_260 0.1482991265 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
3 Hb_003633_140 0.1739201914 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
4 Hb_001999_250 0.1844914607 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
5 Hb_028795_010 0.198080794 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_012226_010 0.2041244985 - - PREDICTED: protein DGCR14 [Jatropha curcas]
7 Hb_001141_360 0.2073729573 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_002235_240 0.2103083264 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
9 Hb_009372_010 0.2120901499 - - -
10 Hb_004800_190 0.2129421602 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
11 Hb_001225_090 0.2133525149 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
12 Hb_154471_010 0.214975372 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_002835_250 0.2247047715 - - octicosapeptide/Phox/Bem1p domain-containing family protein [Populus trichocarpa]
14 Hb_181975_010 0.2252184094 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
15 Hb_002316_050 0.2282849736 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001907_100 0.2284356251 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_001660_090 0.2297728186 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
18 Hb_002609_090 0.2366827121 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000836_120 0.2374512805 - - syntaxin, putative [Ricinus communis]
20 Hb_025306_010 0.2389388525 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]

Gene co-expression network

sample Hb_001584_220 Hb_001584_220 Hb_003849_260 Hb_003849_260 Hb_001584_220--Hb_003849_260 Hb_003633_140 Hb_003633_140 Hb_001584_220--Hb_003633_140 Hb_001999_250 Hb_001999_250 Hb_001584_220--Hb_001999_250 Hb_028795_010 Hb_028795_010 Hb_001584_220--Hb_028795_010 Hb_012226_010 Hb_012226_010 Hb_001584_220--Hb_012226_010 Hb_001141_360 Hb_001141_360 Hb_001584_220--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_003849_260--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_003849_260--Hb_000836_120 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_002686_280 Hb_002686_280 Hb_003849_260--Hb_002686_280 Hb_003633_140--Hb_028795_010 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_002316_050 Hb_002316_050 Hb_003633_140--Hb_002316_050 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_001247_230 Hb_001247_230 Hb_001999_250--Hb_001247_230 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_000265_250 Hb_000265_250 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_002849_080 Hb_002849_080 Hb_001999_250--Hb_002849_080 Hb_009372_010 Hb_009372_010 Hb_028795_010--Hb_009372_010 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_000808_070 Hb_000808_070 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_000340_110 Hb_000340_110 Hb_012226_010--Hb_000340_110 Hb_003125_030 Hb_003125_030 Hb_012226_010--Hb_003125_030 Hb_029223_050 Hb_029223_050 Hb_012226_010--Hb_029223_050 Hb_104265_030 Hb_104265_030 Hb_012226_010--Hb_104265_030 Hb_001511_110 Hb_001511_110 Hb_012226_010--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_012226_010--Hb_026198_040 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3269 79.4814 4.18344 1.01172 19.5272 24.1042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40488 6.98605 2.24425 4.49747 2.14953

CAGE analysis