Hb_001565_120

Information

Type -
Description -
Location Contig1565: 117946-122135
Sequence    

Annotation

kegg
ID cic:CICLE_v10007621mg
description hypothetical protein
nr
ID XP_012076851.1
description PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9M1S8
description Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3
trembl
ID A0A067KC51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07357 PE=4 SV=1
Gene Ontology
ID GO:0004180
description probable glutamate carboxypeptidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13615: 118051-121870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_120 0.0 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
2 Hb_090459_010 0.1267577724 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
3 Hb_127819_010 0.1484530166 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_116685_010 0.168472877 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_012760_180 0.1691348507 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
6 Hb_000960_010 0.1758607756 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_011885_010 0.1949949222 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_143863_010 0.1979157261 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
9 Hb_138575_010 0.2010090999 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_003893_020 0.2061839475 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
11 Hb_131956_010 0.207813518 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
12 Hb_009897_020 0.2082477704 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_162074_010 0.2098307551 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_155642_010 0.2110589502 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_136886_010 0.2113029443 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_004800_190 0.2160610801 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
17 Hb_125981_010 0.2182210191 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
18 Hb_126506_010 0.2229554717 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_050495_010 0.2240511515 - - heat-shock protein, putative [Ricinus communis]
20 Hb_001922_160 0.2320414226 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001565_120 Hb_001565_120 Hb_090459_010 Hb_090459_010 Hb_001565_120--Hb_090459_010 Hb_127819_010 Hb_127819_010 Hb_001565_120--Hb_127819_010 Hb_116685_010 Hb_116685_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_000960_010 Hb_000960_010 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_090459_010--Hb_116685_010 Hb_090459_010--Hb_000960_010 Hb_090459_010--Hb_127819_010 Hb_136886_010 Hb_136886_010 Hb_090459_010--Hb_136886_010 Hb_155642_010 Hb_155642_010 Hb_090459_010--Hb_155642_010 Hb_127819_010--Hb_000960_010 Hb_127819_010--Hb_136886_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010 Hb_116685_010--Hb_125981_010 Hb_116685_010--Hb_127819_010 Hb_116685_010--Hb_000960_010 Hb_116685_010--Hb_155642_010 Hb_012760_180--Hb_011885_010 Hb_138575_010 Hb_138575_010 Hb_012760_180--Hb_138575_010 Hb_116635_010 Hb_116635_010 Hb_012760_180--Hb_116635_010 Hb_143863_010 Hb_143863_010 Hb_012760_180--Hb_143863_010 Hb_012760_180--Hb_000960_010 Hb_000960_010--Hb_136886_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_009897_020 Hb_009897_020 Hb_011885_010--Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_011885_010--Hb_162074_010 Hb_000488_020 Hb_000488_020 Hb_011885_010--Hb_000488_020 Hb_004800_190 Hb_004800_190 Hb_011885_010--Hb_004800_190 Hb_000225_050 Hb_000225_050 Hb_011885_010--Hb_000225_050 Hb_001514_060 Hb_001514_060 Hb_011885_010--Hb_001514_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.5218 442.015 10.8923 31.6377 32.8848 64.5722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9272 0.784609 0.0861532 20.4256 3.93791

CAGE analysis