Hb_155642_010

Information

Type -
Description -
Location Contig155642: 93-1028
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID KDO64062.1
description hypothetical protein CISIN_1g022501mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13504: 672-1108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155642_010 0.0 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
2 Hb_125981_010 0.1560093194 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
3 Hb_127819_010 0.1560232226 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000960_010 0.1603273269 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_126506_010 0.1671677428 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_090459_010 0.1764199595 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
7 Hb_116685_010 0.1833277901 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_183539_010 0.185867541 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
9 Hb_042553_010 0.1952536121 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
10 Hb_162074_010 0.2014350058 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_102100_010 0.2014747736 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_003893_020 0.2024363916 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
13 Hb_107495_050 0.2047907707 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
14 Hb_016404_010 0.2062148642 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_000029_280 0.2095717465 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
16 Hb_001565_120 0.2110589502 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
17 Hb_007951_120 0.211073251 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
18 Hb_000506_140 0.2120085124 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
19 Hb_136886_010 0.2146060986 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_001248_110 0.2212666775 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_155642_010 Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_155642_010--Hb_125981_010 Hb_127819_010 Hb_127819_010 Hb_155642_010--Hb_127819_010 Hb_000960_010 Hb_000960_010 Hb_155642_010--Hb_000960_010 Hb_126506_010 Hb_126506_010 Hb_155642_010--Hb_126506_010 Hb_090459_010 Hb_090459_010 Hb_155642_010--Hb_090459_010 Hb_116685_010 Hb_116685_010 Hb_155642_010--Hb_116685_010 Hb_125981_010--Hb_116685_010 Hb_125981_010--Hb_127819_010 Hb_125981_010--Hb_090459_010 Hb_003893_020 Hb_003893_020 Hb_125981_010--Hb_003893_020 Hb_125981_010--Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_127819_010--Hb_136886_010 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_000960_010--Hb_136886_010 Hb_000960_010--Hb_090459_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_162074_010 Hb_162074_010 Hb_126506_010--Hb_162074_010 Hb_003155_020 Hb_003155_020 Hb_126506_010--Hb_003155_020 Hb_009897_020 Hb_009897_020 Hb_126506_010--Hb_009897_020 Hb_123885_010 Hb_123885_010 Hb_126506_010--Hb_123885_010 Hb_001248_110 Hb_001248_110 Hb_126506_010--Hb_001248_110 Hb_090459_010--Hb_116685_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_136886_010 Hb_116685_010--Hb_127819_010 Hb_116685_010--Hb_001565_120 Hb_116685_010--Hb_000960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39961 22.8947 1.45518 4.92832 1.09929 4.02012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.317387 0.505897 0.440765

CAGE analysis