Hb_143863_010

Information

Type -
Description -
Location Contig143863: 1-1021
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05300g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_011007552.1
description PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9NCL4
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0019s05300g PE=4 SV=1
Gene Ontology
ID GO:0000166
description phosphoprotein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11566: 202-626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143863_010 0.0 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
2 Hb_000960_010 0.1431962691 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_136886_010 0.179463105 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_090459_010 0.1848286732 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
5 Hb_001565_120 0.1979157261 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
6 Hb_000488_020 0.1993064231 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
7 Hb_011885_010 0.2023857284 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_001546_110 0.2042974183 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
9 Hb_088084_010 0.2051416122 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
10 Hb_056012_010 0.20557693 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
11 Hb_127819_010 0.2056654023 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_012760_180 0.2078529159 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
13 Hb_138575_010 0.2102437842 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_004800_190 0.2126122675 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
15 Hb_162074_010 0.2127985538 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_102100_010 0.2160350257 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_002217_270 0.2170114966 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
18 Hb_001514_060 0.217409578 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
19 Hb_000015_180 0.2187154299 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_009897_020 0.2242041086 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_143863_010 Hb_143863_010 Hb_000960_010 Hb_000960_010 Hb_143863_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_143863_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_143863_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_143863_010--Hb_001565_120 Hb_000488_020 Hb_000488_020 Hb_143863_010--Hb_000488_020 Hb_011885_010 Hb_011885_010 Hb_143863_010--Hb_011885_010 Hb_000960_010--Hb_136886_010 Hb_127819_010 Hb_127819_010 Hb_000960_010--Hb_127819_010 Hb_000960_010--Hb_090459_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_116685_010 Hb_116685_010 Hb_090459_010--Hb_116685_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_127819_010 Hb_090459_010--Hb_136886_010 Hb_155642_010 Hb_155642_010 Hb_090459_010--Hb_155642_010 Hb_001565_120--Hb_127819_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_001565_120--Hb_011885_010 Hb_001514_060 Hb_001514_060 Hb_000488_020--Hb_001514_060 Hb_000488_020--Hb_011885_010 Hb_004800_190 Hb_004800_190 Hb_000488_020--Hb_004800_190 Hb_009897_020 Hb_009897_020 Hb_000488_020--Hb_009897_020 Hb_000540_010 Hb_000540_010 Hb_000488_020--Hb_000540_010 Hb_011885_010--Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_011885_010--Hb_162074_010 Hb_011885_010--Hb_004800_190 Hb_000225_050 Hb_000225_050 Hb_011885_010--Hb_000225_050 Hb_011885_010--Hb_001514_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.57147 38.9151 3.78315 3.84169 6.58922 1.95984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51131 0.748342 0.0805793 0.65633 0.716119

CAGE analysis