Hb_000960_010

Information

Type -
Description -
Location Contig960: 1070-2940
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_136886_010 0.1047730885 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_127819_010 0.1204032037 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_090459_010 0.1217977304 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
5 Hb_143863_010 0.1431962691 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
6 Hb_102100_010 0.147759829 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000015_180 0.1478748094 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
8 Hb_056012_010 0.1487153372 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_155642_010 0.1603273269 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_162074_010 0.1615669109 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_000220_090 0.1695780392 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
12 Hb_002217_270 0.1711781574 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
13 Hb_138575_010 0.1725924376 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_185513_010 0.1747021198 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001565_120 0.1758607756 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
16 Hb_116685_010 0.1758715546 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_003038_010 0.1819741402 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_016404_010 0.182954989 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_009897_020 0.1893281397 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_012725_040 0.1921436438 - - receptor serine-threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000960_010 Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_000960_010--Hb_136886_010 Hb_127819_010 Hb_127819_010 Hb_000960_010--Hb_127819_010 Hb_090459_010 Hb_090459_010 Hb_000960_010--Hb_090459_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010 Hb_116685_010 Hb_116685_010 Hb_090459_010--Hb_116685_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_136886_010 Hb_090459_010--Hb_155642_010 Hb_143863_010--Hb_136886_010 Hb_143863_010--Hb_090459_010 Hb_143863_010--Hb_001565_120 Hb_000488_020 Hb_000488_020 Hb_143863_010--Hb_000488_020 Hb_011885_010 Hb_011885_010 Hb_143863_010--Hb_011885_010 Hb_056012_010 Hb_056012_010 Hb_102100_010--Hb_056012_010 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_000220_090 Hb_000220_090 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_000015_180--Hb_000220_090 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3707 122.928 13.2219 18.6602 8.5515 12.4552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70973 2.05782 1.08669 2.19852 2.26545

CAGE analysis