Hb_125981_010

Information

Type -
Description -
Location Contig125981: 24-500
Sequence    

Annotation

kegg
ID pop:POPTR_0005s042901
description hypothetical protein
nr
ID XP_006382668.1
description hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GAL4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s042901g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125981_010 0.0 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
2 Hb_116685_010 0.1525436071 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_155642_010 0.1560093194 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_127819_010 0.1605366898 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_090459_010 0.1780750026 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
6 Hb_003893_020 0.1927052739 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
7 Hb_000960_010 0.1978977308 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_001565_120 0.2182210191 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
9 Hb_136886_010 0.2200606875 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_003142_100 0.2262143009 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
11 Hb_158803_020 0.2271865886 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
12 Hb_107495_050 0.2288944825 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
13 Hb_083862_010 0.2410441514 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
14 Hb_016404_010 0.2427845325 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_005588_140 0.244410887 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000029_280 0.2445149377 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
17 Hb_127628_010 0.2446375735 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_000465_330 0.2467879268 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
19 Hb_000813_080 0.2468565643 - - caspase, putative [Ricinus communis]
20 Hb_009773_040 0.2499364131 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_125981_010 Hb_125981_010 Hb_116685_010 Hb_116685_010 Hb_125981_010--Hb_116685_010 Hb_155642_010 Hb_155642_010 Hb_125981_010--Hb_155642_010 Hb_127819_010 Hb_127819_010 Hb_125981_010--Hb_127819_010 Hb_090459_010 Hb_090459_010 Hb_125981_010--Hb_090459_010 Hb_003893_020 Hb_003893_020 Hb_125981_010--Hb_003893_020 Hb_000960_010 Hb_000960_010 Hb_125981_010--Hb_000960_010 Hb_116685_010--Hb_090459_010 Hb_116685_010--Hb_127819_010 Hb_001565_120 Hb_001565_120 Hb_116685_010--Hb_001565_120 Hb_116685_010--Hb_000960_010 Hb_116685_010--Hb_155642_010 Hb_155642_010--Hb_127819_010 Hb_155642_010--Hb_000960_010 Hb_126506_010 Hb_126506_010 Hb_155642_010--Hb_126506_010 Hb_155642_010--Hb_090459_010 Hb_127819_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_127819_010--Hb_136886_010 Hb_127819_010--Hb_090459_010 Hb_127819_010--Hb_001565_120 Hb_090459_010--Hb_000960_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_136886_010 Hb_116635_010 Hb_116635_010 Hb_003893_020--Hb_116635_010 Hb_107495_050 Hb_107495_050 Hb_003893_020--Hb_107495_050 Hb_001922_160 Hb_001922_160 Hb_003893_020--Hb_001922_160 Hb_002701_140 Hb_002701_140 Hb_003893_020--Hb_002701_140 Hb_005588_140 Hb_005588_140 Hb_003893_020--Hb_005588_140 Hb_003893_020--Hb_127819_010 Hb_000960_010--Hb_136886_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0601 25.2847 1.35605 3.52129 2.0675 3.52072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis