Hb_005588_140

Information

Type -
Description -
Location Contig5588: 123718-131441
Sequence    

Annotation

kegg
ID rcu:RCOM_0393610
description hypothetical protein
nr
ID XP_002531397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VR4
description MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=2 SV=1
trembl
ID B9SZH8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0393610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48651: 123663-124569 , PASA_asmbl_48652: 125062-125538 , PASA_asmbl_48653: 130734-131307
cDNA
(Sanger)
(ID:Location)		 017_N20.ab1: 123661-124569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000072_310 0.071890937 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
3 Hb_107495_050 0.1102131826 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
4 Hb_052530_030 0.1206046304 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
5 Hb_002639_090 0.123370866 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
6 Hb_000840_230 0.1430549159 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
7 Hb_022534_020 0.158539766 - - PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
8 Hb_000336_160 0.1632977971 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000318_320 0.1679845453 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
10 Hb_007371_010 0.1705676271 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
11 Hb_083862_010 0.1710835964 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
12 Hb_013862_010 0.1725001621 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
13 Hb_001693_030 0.1730153343 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
14 Hb_077562_010 0.173571491 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
15 Hb_023675_020 0.173737043 - - acc synthase, putative [Ricinus communis]
16 Hb_000103_280 0.1741262458 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
17 Hb_010615_010 0.1746531026 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
18 Hb_000045_110 0.1750334978 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_001784_010 0.1753618872 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_117335_020 0.1755782452 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_140 Hb_005588_140 Hb_000072_310 Hb_000072_310 Hb_005588_140--Hb_000072_310 Hb_107495_050 Hb_107495_050 Hb_005588_140--Hb_107495_050 Hb_052530_030 Hb_052530_030 Hb_005588_140--Hb_052530_030 Hb_002639_090 Hb_002639_090 Hb_005588_140--Hb_002639_090 Hb_000840_230 Hb_000840_230 Hb_005588_140--Hb_000840_230 Hb_022534_020 Hb_022534_020 Hb_005588_140--Hb_022534_020 Hb_000072_310--Hb_002639_090 Hb_000072_310--Hb_052530_030 Hb_000072_310--Hb_000840_230 Hb_000318_320 Hb_000318_320 Hb_000072_310--Hb_000318_320 Hb_000072_310--Hb_107495_050 Hb_083862_010 Hb_083862_010 Hb_107495_050--Hb_083862_010 Hb_000087_180 Hb_000087_180 Hb_107495_050--Hb_000087_180 Hb_107495_050--Hb_002639_090 Hb_000506_140 Hb_000506_140 Hb_107495_050--Hb_000506_140 Hb_023675_020 Hb_023675_020 Hb_052530_030--Hb_023675_020 Hb_000103_280 Hb_000103_280 Hb_052530_030--Hb_000103_280 Hb_117335_020 Hb_117335_020 Hb_052530_030--Hb_117335_020 Hb_010615_010 Hb_010615_010 Hb_052530_030--Hb_010615_010 Hb_001784_010 Hb_001784_010 Hb_052530_030--Hb_001784_010 Hb_002639_090--Hb_000840_230 Hb_077562_010 Hb_077562_010 Hb_002639_090--Hb_077562_010 Hb_002639_090--Hb_052530_030 Hb_009393_010 Hb_009393_010 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_000840_230--Hb_077562_010 Hb_000840_230--Hb_000318_320 Hb_000840_230--Hb_009393_010 Hb_000045_110 Hb_000045_110 Hb_022534_020--Hb_000045_110 Hb_000426_060 Hb_000426_060 Hb_022534_020--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_022534_020--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_022534_020--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_022534_020--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_022534_020--Hb_000592_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.35744 851.808 4.54307 200.31 22.2045 18.4482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.900462 0.573381 0 6.20712 3.62011

CAGE analysis