Hb_000840_230

Information

Type -
Description -
Location Contig840: 172466-172843
Sequence    

Annotation

kegg
ID rcu:RCOM_1730930
description RING-H2 finger protein ATL1L, putative
nr
ID XP_002522190.1
description RING-H2 finger protein ATL1L, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S871
description RING-H2 finger protein ATL1L, putative OS=Ricinus communis GN=RCOM_1730930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_230 0.0 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
2 Hb_002639_090 0.0905492523 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
3 Hb_077562_010 0.1112743656 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
4 Hb_000072_310 0.1134019585 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
5 Hb_000318_320 0.1393603921 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
6 Hb_005588_140 0.1430549159 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009393_010 0.1441937328 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
8 Hb_002422_030 0.1454166084 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
9 Hb_013862_010 0.1472878276 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
10 Hb_004607_180 0.1491854139 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011805_060 0.1500807325 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_004162_030 0.153450597 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
13 Hb_009252_140 0.1538668749 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_052530_030 0.1560765027 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
15 Hb_007371_010 0.1595374306 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
16 Hb_073973_180 0.1597915372 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
17 Hb_008296_010 0.1601817665 - - -
18 Hb_001784_010 0.160200125 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_009230_050 0.1602282378 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
20 Hb_010615_010 0.160385425 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000840_230 Hb_000840_230 Hb_002639_090 Hb_002639_090 Hb_000840_230--Hb_002639_090 Hb_077562_010 Hb_077562_010 Hb_000840_230--Hb_077562_010 Hb_000072_310 Hb_000072_310 Hb_000840_230--Hb_000072_310 Hb_000318_320 Hb_000318_320 Hb_000840_230--Hb_000318_320 Hb_005588_140 Hb_005588_140 Hb_000840_230--Hb_005588_140 Hb_009393_010 Hb_009393_010 Hb_000840_230--Hb_009393_010 Hb_002639_090--Hb_000072_310 Hb_002639_090--Hb_077562_010 Hb_052530_030 Hb_052530_030 Hb_002639_090--Hb_052530_030 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_077562_010--Hb_000318_320 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010 Hb_000072_310--Hb_005588_140 Hb_000072_310--Hb_052530_030 Hb_000072_310--Hb_000318_320 Hb_107495_050 Hb_107495_050 Hb_000072_310--Hb_107495_050 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_005588_140--Hb_107495_050 Hb_005588_140--Hb_052530_030 Hb_005588_140--Hb_002639_090 Hb_022534_020 Hb_022534_020 Hb_005588_140--Hb_022534_020 Hb_025477_030 Hb_025477_030 Hb_009393_010--Hb_025477_030 Hb_013726_100 Hb_013726_100 Hb_009393_010--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_009393_010--Hb_000256_050 Hb_167802_010 Hb_167802_010 Hb_009393_010--Hb_167802_010 Hb_002475_110 Hb_002475_110 Hb_009393_010--Hb_002475_110 Hb_000134_010 Hb_000134_010 Hb_009393_010--Hb_000134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.7556 0.154335 3.54901 0 0.257437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151788 0.30134

CAGE analysis