Hb_004607_180

Information

Type -
Description -
Location Contig4607: 137028-141557
Sequence    

Annotation

kegg
ID rcu:RCOM_1577270
description hypothetical protein
nr
ID XP_002513461.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RI92
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_077562_010 0.1012604579 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
3 Hb_000318_320 0.1246878599 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
4 Hb_002639_090 0.1327546657 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
5 Hb_087468_010 0.1333993581 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
6 Hb_017434_020 0.1344271563 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
7 Hb_001529_020 0.1407843226 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_003800_010 0.1436050788 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
9 Hb_000984_120 0.1463837559 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000840_230 0.1491854139 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
11 Hb_024857_010 0.1506091734 - - glutaredoxin 2.1 [Hevea brasiliensis]
12 Hb_001998_130 0.1510709038 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
13 Hb_002107_080 0.1518669307 - - JHL20J20.3 [Jatropha curcas]
14 Hb_000417_230 0.1547805087 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004968_050 0.1550467043 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
16 Hb_000087_180 0.1566641969 - - conserved hypothetical protein [Ricinus communis]
17 Hb_052113_020 0.1584284241 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_007305_040 0.1595763516 - - Nodulin-26, putative [Ricinus communis]
19 Hb_094839_010 0.1597761158 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005694_030 0.1616642344 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]

Gene co-expression network

sample Hb_004607_180 Hb_004607_180 Hb_077562_010 Hb_077562_010 Hb_004607_180--Hb_077562_010 Hb_000318_320 Hb_000318_320 Hb_004607_180--Hb_000318_320 Hb_002639_090 Hb_002639_090 Hb_004607_180--Hb_002639_090 Hb_087468_010 Hb_087468_010 Hb_004607_180--Hb_087468_010 Hb_017434_020 Hb_017434_020 Hb_004607_180--Hb_017434_020 Hb_001529_020 Hb_001529_020 Hb_004607_180--Hb_001529_020 Hb_077562_010--Hb_000318_320 Hb_000840_230 Hb_000840_230 Hb_077562_010--Hb_000840_230 Hb_077562_010--Hb_002639_090 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_002639_090--Hb_000840_230 Hb_000072_310 Hb_000072_310 Hb_002639_090--Hb_000072_310 Hb_052530_030 Hb_052530_030 Hb_002639_090--Hb_052530_030 Hb_009393_010 Hb_009393_010 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_024857_010 Hb_024857_010 Hb_087468_010--Hb_024857_010 Hb_000111_150 Hb_000111_150 Hb_087468_010--Hb_000111_150 Hb_000252_190 Hb_000252_190 Hb_087468_010--Hb_000252_190 Hb_001897_030 Hb_001897_030 Hb_087468_010--Hb_001897_030 Hb_132517_010 Hb_132517_010 Hb_087468_010--Hb_132517_010 Hb_005396_110 Hb_005396_110 Hb_087468_010--Hb_005396_110 Hb_000087_180 Hb_000087_180 Hb_017434_020--Hb_000087_180 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_000506_130 Hb_000506_130 Hb_017434_020--Hb_000506_130 Hb_000506_140 Hb_000506_140 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_002042_190 Hb_002042_190 Hb_001529_020--Hb_002042_190 Hb_007305_040 Hb_007305_040 Hb_001529_020--Hb_007305_040 Hb_152764_010 Hb_152764_010 Hb_001529_020--Hb_152764_010 Hb_000625_040 Hb_000625_040 Hb_001529_020--Hb_000625_040 Hb_007371_010 Hb_007371_010 Hb_001529_020--Hb_007371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13149 12.3064 0.22938 5.00228 0.0268439 0.0159815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.146944 0 0.5128 0.276632

CAGE analysis