Hb_001998_130

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1998: 174711-177240
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46490g
description POPTRDRAFT_841048; WRKY transcription factor 35 family protein
nr
ID XP_002299016.1
description WRKY transcription factor 35 family protein [Populus trichocarpa]
swissprot
ID Q9SA80
description Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2
trembl
ID B9GGH3
description WRKY transcription factor 35 family protein OS=Populus trichocarpa GN=POPTR_0001s46490g PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_130 0.0 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
2 Hb_013862_010 0.0714565019 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
3 Hb_004089_010 0.0983615742 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
4 Hb_023502_010 0.112383314 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_000206_280 0.1125742524 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
6 Hb_091826_010 0.1138133318 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_077562_010 0.1142409083 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
8 Hb_003938_150 0.1154415693 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
9 Hb_007556_010 0.1158352827 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
10 Hb_070850_010 0.1160937165 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
11 Hb_007235_040 0.1180249822 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_010028_010 0.1191124776 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
13 Hb_009230_050 0.1234799595 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
14 Hb_005694_030 0.1252097919 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
15 Hb_008296_010 0.125814189 - - -
16 Hb_001784_010 0.126488191 - - nutrient reservoir, putative [Ricinus communis]
17 Hb_010615_010 0.1291038764 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
18 Hb_001510_050 0.1305696609 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000103_280 0.1317944794 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
20 Hb_085910_010 0.13296217 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001998_130 Hb_001998_130 Hb_013862_010 Hb_013862_010 Hb_001998_130--Hb_013862_010 Hb_004089_010 Hb_004089_010 Hb_001998_130--Hb_004089_010 Hb_023502_010 Hb_023502_010 Hb_001998_130--Hb_023502_010 Hb_000206_280 Hb_000206_280 Hb_001998_130--Hb_000206_280 Hb_091826_010 Hb_091826_010 Hb_001998_130--Hb_091826_010 Hb_077562_010 Hb_077562_010 Hb_001998_130--Hb_077562_010 Hb_070850_010 Hb_070850_010 Hb_013862_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_013862_010--Hb_007556_010 Hb_003938_150 Hb_003938_150 Hb_013862_010--Hb_003938_150 Hb_009230_050 Hb_009230_050 Hb_013862_010--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_013862_010--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_013862_010--Hb_001784_010 Hb_002393_060 Hb_002393_060 Hb_004089_010--Hb_002393_060 Hb_004767_010 Hb_004767_010 Hb_004089_010--Hb_004767_010 Hb_004089_010--Hb_091826_010 Hb_001131_100 Hb_001131_100 Hb_004089_010--Hb_001131_100 Hb_161954_010 Hb_161954_010 Hb_004089_010--Hb_161954_010 Hb_023502_010--Hb_000206_280 Hb_007235_040 Hb_007235_040 Hb_023502_010--Hb_007235_040 Hb_010028_010 Hb_010028_010 Hb_023502_010--Hb_010028_010 Hb_023502_010--Hb_003938_150 Hb_023502_010--Hb_007556_010 Hb_023502_010--Hb_070850_010 Hb_000206_280--Hb_007235_040 Hb_000206_280--Hb_010028_010 Hb_000206_280--Hb_003938_150 Hb_000206_280--Hb_007556_010 Hb_000206_280--Hb_070850_010 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_091826_010--Hb_012753_100 Hb_000318_320 Hb_000318_320 Hb_077562_010--Hb_000318_320 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_000840_230 Hb_000840_230 Hb_077562_010--Hb_000840_230 Hb_002639_090 Hb_002639_090 Hb_077562_010--Hb_002639_090 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.619732 0 0.234392 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.021853 0

CAGE analysis