Hb_002393_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig2393: 87867-95400
Sequence    

Annotation

kegg
ID fve:101301312
description transcription factor TT2-like
nr
ID XP_012077551.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9FJA2
description Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1
trembl
ID A0A097HUN7
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002393_060 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_004767_010 0.0389176652 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
3 Hb_161954_010 0.0598029828 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
4 Hb_004089_010 0.0785280571 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
5 Hb_091826_010 0.1150950554 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_006816_540 0.1196632953 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
7 Hb_162047_010 0.1298245018 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
8 Hb_000983_180 0.1412623315 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001998_130 0.1528253506 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
10 Hb_001227_010 0.1611813946 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
11 Hb_000172_020 0.1621347882 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
12 Hb_005096_020 0.162188471 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
13 Hb_135513_010 0.1623344074 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_110587_010 0.162546918 - - unnamed protein product [Coffea canephora]
15 Hb_006856_060 0.1626921731 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_081287_010 0.1627908839 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
17 Hb_019135_030 0.1629340597 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
18 Hb_126916_010 0.1629823752 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
19 Hb_000302_050 0.1630462149 - - -
20 Hb_005366_030 0.1631024062 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_002393_060 Hb_002393_060 Hb_004767_010 Hb_004767_010 Hb_002393_060--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_002393_060--Hb_161954_010 Hb_004089_010 Hb_004089_010 Hb_002393_060--Hb_004089_010 Hb_091826_010 Hb_091826_010 Hb_002393_060--Hb_091826_010 Hb_006816_540 Hb_006816_540 Hb_002393_060--Hb_006816_540 Hb_162047_010 Hb_162047_010 Hb_002393_060--Hb_162047_010 Hb_004767_010--Hb_161954_010 Hb_004767_010--Hb_091826_010 Hb_004767_010--Hb_004089_010 Hb_000983_180 Hb_000983_180 Hb_004767_010--Hb_000983_180 Hb_004767_010--Hb_006816_540 Hb_161954_010--Hb_006816_540 Hb_161954_010--Hb_000983_180 Hb_161954_010--Hb_091826_010 Hb_161954_010--Hb_004089_010 Hb_001998_130 Hb_001998_130 Hb_004089_010--Hb_001998_130 Hb_004089_010--Hb_091826_010 Hb_001131_100 Hb_001131_100 Hb_004089_010--Hb_001131_100 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_091826_010--Hb_012753_100 Hb_007885_120 Hb_007885_120 Hb_006816_540--Hb_007885_120 Hb_006890_050 Hb_006890_050 Hb_006816_540--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_006816_540--Hb_001227_010 Hb_162047_010--Hb_091826_010 Hb_162047_010--Hb_004767_010 Hb_162047_010--Hb_000983_180 Hb_162047_010--Hb_004089_010 Hb_162047_010--Hb_161954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.16404 0 0.126596 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158076 0

CAGE analysis