Hb_162047_010

Information

Type -
Description -
Location Contig162047: 3686-4216
Sequence    

Annotation

kegg
ID rcu:RCOM_1506160
description nucleic acid binding protein, putative
nr
ID XP_012079829.1
description PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID A0A067K7B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14606: 3917-4232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162047_010 0.0 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
2 Hb_091826_010 0.1130722148 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_004767_010 0.1268748505 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
4 Hb_002393_060 0.1298245018 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
5 Hb_000983_180 0.1336822803 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004089_010 0.1395611532 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
7 Hb_161954_010 0.1476190482 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
8 Hb_001998_130 0.1481374586 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
9 Hb_015183_050 0.1484421396 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
10 Hb_081065_010 0.1485402556 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
11 Hb_004961_010 0.1488066383 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_008289_020 0.1488772978 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
13 Hb_021485_010 0.1489185961 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
14 Hb_005366_030 0.1496925525 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_019135_030 0.149909648 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
16 Hb_012753_100 0.1501053763 - - conserved hypothetical protein [Ricinus communis]
17 Hb_081287_010 0.1501281768 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
18 Hb_110587_010 0.1506079566 - - unnamed protein product [Coffea canephora]
19 Hb_135513_010 0.1512331864 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_085910_010 0.1522916871 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_162047_010 Hb_162047_010 Hb_091826_010 Hb_091826_010 Hb_162047_010--Hb_091826_010 Hb_004767_010 Hb_004767_010 Hb_162047_010--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_162047_010--Hb_002393_060 Hb_000983_180 Hb_000983_180 Hb_162047_010--Hb_000983_180 Hb_004089_010 Hb_004089_010 Hb_162047_010--Hb_004089_010 Hb_161954_010 Hb_161954_010 Hb_162047_010--Hb_161954_010 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_091826_010--Hb_012753_100 Hb_004767_010--Hb_161954_010 Hb_004767_010--Hb_002393_060 Hb_004767_010--Hb_091826_010 Hb_004767_010--Hb_004089_010 Hb_004767_010--Hb_000983_180 Hb_006816_540 Hb_006816_540 Hb_004767_010--Hb_006816_540 Hb_002393_060--Hb_161954_010 Hb_002393_060--Hb_004089_010 Hb_002393_060--Hb_091826_010 Hb_002393_060--Hb_006816_540 Hb_000770_020 Hb_000770_020 Hb_000983_180--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_000983_180--Hb_011045_020 Hb_010374_010 Hb_010374_010 Hb_000983_180--Hb_010374_010 Hb_005839_070 Hb_005839_070 Hb_000983_180--Hb_005839_070 Hb_000302_050 Hb_000302_050 Hb_000983_180--Hb_000302_050 Hb_126916_010 Hb_126916_010 Hb_000983_180--Hb_126916_010 Hb_001998_130 Hb_001998_130 Hb_004089_010--Hb_001998_130 Hb_004089_010--Hb_091826_010 Hb_001131_100 Hb_001131_100 Hb_004089_010--Hb_001131_100 Hb_004089_010--Hb_161954_010 Hb_161954_010--Hb_006816_540 Hb_161954_010--Hb_000983_180 Hb_161954_010--Hb_091826_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.47728 0 4.82057 0 0.08917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.191399 0 0.277044 0

CAGE analysis