Hb_022534_020

Information

Type -
Description -
Location Contig22534: 1819-4237
Sequence    

Annotation

kegg
ID mdm:103422158
description uncharacterized LOC103422158
nr
ID XP_008358416.1
description PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
swissprot
ID -
description -
trembl
ID V4T873
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000151mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022534_020 0.0 - - PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
2 Hb_000045_110 0.127330845 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
3 Hb_000426_060 0.1330222761 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
4 Hb_002851_050 0.1331053435 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
5 Hb_000994_090 0.1335656124 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
6 Hb_000426_070 0.134077708 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
7 Hb_000592_040 0.1341881733 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001405_180 0.1359228839 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000499_050 0.1359354437 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_039757_010 0.1367898697 - - -
11 Hb_001693_030 0.1434640015 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
12 Hb_004767_040 0.1455666743 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_117335_020 0.1456339735 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
14 Hb_023675_020 0.1537012323 - - acc synthase, putative [Ricinus communis]
15 Hb_009897_030 0.1553925064 - - -
16 Hb_013057_010 0.1559232787 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
17 Hb_005588_150 0.1565214825 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005588_140 0.158539766 - - conserved hypothetical protein [Ricinus communis]
19 Hb_052530_030 0.163273031 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
20 Hb_120917_010 0.165114428 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]

Gene co-expression network

sample Hb_022534_020 Hb_022534_020 Hb_000045_110 Hb_000045_110 Hb_022534_020--Hb_000045_110 Hb_000426_060 Hb_000426_060 Hb_022534_020--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_022534_020--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_022534_020--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_022534_020--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_022534_020--Hb_000592_040 Hb_008931_020 Hb_008931_020 Hb_000045_110--Hb_008931_020 Hb_004767_040 Hb_004767_040 Hb_000045_110--Hb_004767_040 Hb_001405_180 Hb_001405_180 Hb_000045_110--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000045_110--Hb_039757_010 Hb_000045_110--Hb_000426_060 Hb_000045_110--Hb_002851_050 Hb_000426_060--Hb_002851_050 Hb_000426_060--Hb_000994_090 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_000426_060--Hb_001405_180 Hb_000426_060--Hb_039757_010 Hb_002851_050--Hb_000994_090 Hb_002851_050--Hb_000426_070 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050 Hb_002851_050--Hb_001405_180 Hb_000994_090--Hb_000426_070 Hb_000994_090--Hb_000592_040 Hb_000994_090--Hb_000499_050 Hb_000994_090--Hb_001405_180 Hb_000426_070--Hb_000592_040 Hb_000426_070--Hb_000499_050 Hb_117335_020 Hb_117335_020 Hb_000426_070--Hb_117335_020 Hb_000592_040--Hb_000499_050 Hb_000592_040--Hb_117335_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 5.54827 0 0.732734 0 0.167891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis