Hb_090459_010

Information

Type -
Description -
Location Contig90459: 35-736
Sequence    

Annotation

kegg
ID pop:POPTR_0005s042901
description hypothetical protein
nr
ID XP_006382668.1
description hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GAL4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s042901g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090459_010 0.0 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
2 Hb_116685_010 0.1101961856 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000960_010 0.1217977304 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_001565_120 0.1267577724 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
5 Hb_127819_010 0.1295327707 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_136886_010 0.1653879353 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_155642_010 0.1764199595 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_125981_010 0.1780750026 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
9 Hb_143863_010 0.1848286732 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
10 Hb_162074_010 0.2010889038 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_185513_010 0.217212394 - - conserved hypothetical protein [Ricinus communis]
12 Hb_138575_010 0.2189130295 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_126506_010 0.2196558323 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_012760_180 0.2210036952 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
15 Hb_009897_020 0.2216786323 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_011885_010 0.2264361529 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_002326_070 0.2267147901 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
18 Hb_011120_020 0.2269415231 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
19 Hb_003893_020 0.2275438925 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
20 Hb_123885_010 0.2334009499 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_090459_010 Hb_090459_010 Hb_116685_010 Hb_116685_010 Hb_090459_010--Hb_116685_010 Hb_000960_010 Hb_000960_010 Hb_090459_010--Hb_000960_010 Hb_001565_120 Hb_001565_120 Hb_090459_010--Hb_001565_120 Hb_127819_010 Hb_127819_010 Hb_090459_010--Hb_127819_010 Hb_136886_010 Hb_136886_010 Hb_090459_010--Hb_136886_010 Hb_155642_010 Hb_155642_010 Hb_090459_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_116685_010--Hb_125981_010 Hb_116685_010--Hb_127819_010 Hb_116685_010--Hb_001565_120 Hb_116685_010--Hb_000960_010 Hb_116685_010--Hb_155642_010 Hb_000960_010--Hb_136886_010 Hb_000960_010--Hb_127819_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_001565_120--Hb_127819_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_127819_010--Hb_136886_010 Hb_127819_010--Hb_155642_010 Hb_127819_010--Hb_125981_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_155642_010--Hb_125981_010 Hb_155642_010--Hb_000960_010 Hb_126506_010 Hb_126506_010 Hb_155642_010--Hb_126506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89489 31.1365 1.81581 4.38974 2.50498 5.44304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03381 0.369348 0.130093 0.664619 0

CAGE analysis