Hb_127819_010

Information

Type -
Description -
Location Contig127819: 2-659
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID P60838
description Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description phosphoprotein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127819_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_000960_010 0.1204032037 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_136886_010 0.126269552 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_090459_010 0.1295327707 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
5 Hb_001565_120 0.1484530166 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
6 Hb_155642_010 0.1560232226 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_125981_010 0.1605366898 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
8 Hb_116685_010 0.1666234384 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_003893_020 0.18959022 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
10 Hb_003053_060 0.1931147154 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
11 Hb_138575_010 0.1937309005 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_000015_180 0.1967914724 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_003142_100 0.1991101797 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
14 Hb_011120_020 0.1995829976 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
15 Hb_000465_330 0.2033620934 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
16 Hb_143863_010 0.2056654023 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
17 Hb_000506_140 0.2105621797 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
18 Hb_016404_010 0.2117394657 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_102100_010 0.2155928666 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_107495_050 0.2198901371 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_127819_010 Hb_127819_010 Hb_000960_010 Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_127819_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010 Hb_000960_010--Hb_136886_010 Hb_000960_010--Hb_090459_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_116685_010 Hb_116685_010 Hb_090459_010--Hb_116685_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_136886_010 Hb_090459_010--Hb_155642_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_155642_010--Hb_125981_010 Hb_155642_010--Hb_000960_010 Hb_126506_010 Hb_126506_010 Hb_155642_010--Hb_126506_010 Hb_155642_010--Hb_116685_010 Hb_125981_010--Hb_116685_010 Hb_125981_010--Hb_090459_010 Hb_003893_020 Hb_003893_020 Hb_125981_010--Hb_003893_020 Hb_125981_010--Hb_000960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03068 45.3448 1.71379 5.60903 1.84212 4.91615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614504 0.772505 0 0.559344 0.547858

CAGE analysis