Hb_000540_010

Information

Type -
Description -
Location Contig540: 13285-14783
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24010g
description hypothetical protein
nr
ID XP_012064939.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47792: 14237-14612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_010 0.0 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
2 Hb_001514_060 0.1875688488 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
3 Hb_001079_030 0.1988966322 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
4 Hb_078160_010 0.2102601639 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_000659_020 0.2107703315 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
6 Hb_000488_020 0.211189807 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
7 Hb_000991_050 0.2137503223 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
8 Hb_000302_300 0.2309897043 - - PREDICTED: heat shock protein 83 [Populus euphratica]
9 Hb_007423_030 0.2322180992 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
10 Hb_004648_070 0.235544747 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_007137_030 0.2366725146 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
12 Hb_093177_010 0.2371552065 - - Phosphoprotein phosphatase [Theobroma cacao]
13 Hb_004074_030 0.2435161878 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004106_010 0.2445089766 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
15 Hb_009040_010 0.2508348891 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
16 Hb_002774_150 0.252990335 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
17 Hb_115158_010 0.2531607683 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_069841_010 0.2535017695 - - resistance protein [Quercus suber]
19 Hb_143863_010 0.2538591232 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
20 Hb_003914_030 0.2549521167 - - -

Gene co-expression network

sample Hb_000540_010 Hb_000540_010 Hb_001514_060 Hb_001514_060 Hb_000540_010--Hb_001514_060 Hb_001079_030 Hb_001079_030 Hb_000540_010--Hb_001079_030 Hb_078160_010 Hb_078160_010 Hb_000540_010--Hb_078160_010 Hb_000659_020 Hb_000659_020 Hb_000540_010--Hb_000659_020 Hb_000488_020 Hb_000488_020 Hb_000540_010--Hb_000488_020 Hb_000991_050 Hb_000991_050 Hb_000540_010--Hb_000991_050 Hb_162074_010 Hb_162074_010 Hb_001514_060--Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_001514_060--Hb_009897_020 Hb_001514_060--Hb_000488_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_135569_010 Hb_135569_010 Hb_078160_010--Hb_135569_010 Hb_078160_010--Hb_001079_030 Hb_007423_030 Hb_007423_030 Hb_078160_010--Hb_007423_030 Hb_005548_030 Hb_005548_030 Hb_078160_010--Hb_005548_030 Hb_006721_070 Hb_006721_070 Hb_078160_010--Hb_006721_070 Hb_007137_030 Hb_007137_030 Hb_000659_020--Hb_007137_030 Hb_003226_080 Hb_003226_080 Hb_000659_020--Hb_003226_080 Hb_000659_020--Hb_001079_030 Hb_093177_010 Hb_093177_010 Hb_000659_020--Hb_093177_010 Hb_000659_020--Hb_001514_060 Hb_008246_090 Hb_008246_090 Hb_000659_020--Hb_008246_090 Hb_011885_010 Hb_011885_010 Hb_000488_020--Hb_011885_010 Hb_004800_190 Hb_004800_190 Hb_000488_020--Hb_004800_190 Hb_143863_010 Hb_143863_010 Hb_000488_020--Hb_143863_010 Hb_000488_020--Hb_009897_020 Hb_000015_160 Hb_000015_160 Hb_000991_050--Hb_000015_160 Hb_012753_040 Hb_012753_040 Hb_000991_050--Hb_012753_040 Hb_002774_150 Hb_002774_150 Hb_000991_050--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000991_050--Hb_000139_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401934 4.25351 0.865866 1.01483 1.88828 0.111639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0698018 0 0 0.266814 0.549435

CAGE analysis