Hb_008246_090

Information

Type -
Description -
Location Contig8246: 71859-79492
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_090 0.0 - - -
2 Hb_006414_020 0.144299924 transcription factor TF Family: MYB -
3 Hb_003226_080 0.1455234107 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
4 Hb_000803_060 0.1496501702 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
5 Hb_001258_150 0.150341384 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_056012_010 0.1558048565 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
7 Hb_181824_010 0.1586329937 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_007951_120 0.1636978331 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
9 Hb_004787_100 0.1674085878 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
10 Hb_000220_090 0.1699332587 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
11 Hb_102100_010 0.1704770649 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_033149_020 0.1711192511 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_001489_120 0.1711545424 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_005568_060 0.1750371595 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
15 Hb_012725_040 0.1753270789 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
16 Hb_185513_010 0.1804521714 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000069_730 0.1813132222 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
18 Hb_003038_010 0.1838980636 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000103_400 0.1873024433 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
20 Hb_009040_010 0.1882127746 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008246_090 Hb_008246_090 Hb_006414_020 Hb_006414_020 Hb_008246_090--Hb_006414_020 Hb_003226_080 Hb_003226_080 Hb_008246_090--Hb_003226_080 Hb_000803_060 Hb_000803_060 Hb_008246_090--Hb_000803_060 Hb_001258_150 Hb_001258_150 Hb_008246_090--Hb_001258_150 Hb_056012_010 Hb_056012_010 Hb_008246_090--Hb_056012_010 Hb_181824_010 Hb_181824_010 Hb_008246_090--Hb_181824_010 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150 Hb_003226_080--Hb_011360_090 Hb_004586_130 Hb_004586_130 Hb_003226_080--Hb_004586_130 Hb_003226_080--Hb_006414_020 Hb_001989_060 Hb_001989_060 Hb_003226_080--Hb_001989_060 Hb_009040_010 Hb_009040_010 Hb_003226_080--Hb_009040_010 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_001258_150 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_001258_150--Hb_001489_120 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_000071_140 Hb_000071_140 Hb_001258_150--Hb_000071_140 Hb_001258_150--Hb_011360_090 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461241 13.9928 3.72301 2.03764 1.20242 1.46515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.632178 0.620709 0.205792 1.51233 0.226676

CAGE analysis