Hb_003226_080

Information

Type -
Description -
Location Contig3226: 58225-58848
Sequence    

Annotation

kegg
ID rcu:RCOM_1178840
description RING-H2 finger protein ATL3L, putative
nr
ID XP_012082808.1
description PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
swissprot
ID Q9LZJ6
description RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1
trembl
ID A0A067JWC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13958 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_080 0.0 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
2 Hb_011360_090 0.1418640318 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_008246_090 0.1455234107 - - -
4 Hb_004586_130 0.1488704274 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006414_020 0.1504027403 transcription factor TF Family: MYB -
6 Hb_001989_060 0.1528231483 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
7 Hb_009040_010 0.1588087595 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
8 Hb_001258_150 0.1593561999 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
9 Hb_000283_100 0.16131113 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
10 Hb_000805_040 0.161865872 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
11 Hb_001863_270 0.164930098 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
12 Hb_000284_180 0.1656352026 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
13 Hb_004712_160 0.1662634729 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
14 Hb_007951_120 0.1665600889 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
15 Hb_181824_010 0.1665797137 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_000451_040 0.1678817126 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000045_140 0.170324359 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_003216_050 0.1708540099 - - PREDICTED: OBERON-like protein [Jatropha curcas]
19 Hb_033149_020 0.1730794418 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
20 Hb_007120_010 0.1783858488 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_080 Hb_003226_080 Hb_011360_090 Hb_011360_090 Hb_003226_080--Hb_011360_090 Hb_008246_090 Hb_008246_090 Hb_003226_080--Hb_008246_090 Hb_004586_130 Hb_004586_130 Hb_003226_080--Hb_004586_130 Hb_006414_020 Hb_006414_020 Hb_003226_080--Hb_006414_020 Hb_001989_060 Hb_001989_060 Hb_003226_080--Hb_001989_060 Hb_009040_010 Hb_009040_010 Hb_003226_080--Hb_009040_010 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_001662_170 Hb_001662_170 Hb_011360_090--Hb_001662_170 Hb_011360_090--Hb_009040_010 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_011360_090--Hb_006414_020 Hb_008246_090--Hb_006414_020 Hb_008246_090--Hb_000803_060 Hb_001258_150 Hb_001258_150 Hb_008246_090--Hb_001258_150 Hb_056012_010 Hb_056012_010 Hb_008246_090--Hb_056012_010 Hb_181824_010 Hb_181824_010 Hb_008246_090--Hb_181824_010 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_004586_130--Hb_001989_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_006414_020--Hb_012787_040 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150 Hb_001989_060--Hb_000283_100 Hb_001989_060--Hb_010126_030 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_002534_050 Hb_002534_050 Hb_009040_010--Hb_002534_050 Hb_009040_010--Hb_001258_150 Hb_000071_140 Hb_000071_140 Hb_009040_010--Hb_000071_140 Hb_132840_090 Hb_132840_090 Hb_009040_010--Hb_132840_090 Hb_009040_010--Hb_001662_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175398 9.14261 4.06598 2.06916 1.27391 0.754027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.381212 0.149812 0.395234 0.643643 0.437535

CAGE analysis