Hb_000659_020

Information

Type -
Description -
Location Contig659: 22025-23284
Sequence    

Annotation

kegg
ID cic:CICLE_v10003516mg
description hypothetical protein
nr
ID XP_012090752.1
description PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01264 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52901: 22423-23141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_020 0.0 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
2 Hb_007137_030 0.1671858876 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
3 Hb_003226_080 0.1964703276 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
4 Hb_001079_030 0.1985014668 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
5 Hb_093177_010 0.1997440718 - - Phosphoprotein phosphatase [Theobroma cacao]
6 Hb_001514_060 0.2011978837 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
7 Hb_008246_090 0.2050810391 - - -
8 Hb_151671_010 0.2096394822 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
9 Hb_000540_010 0.2107703315 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
10 Hb_001608_030 0.2179986842 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
11 Hb_102100_010 0.2200087088 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_115158_010 0.2203686187 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_004106_010 0.2224619059 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
14 Hb_003216_050 0.2244571746 - - PREDICTED: OBERON-like protein [Jatropha curcas]
15 Hb_056012_010 0.2258198252 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
16 Hb_001749_030 0.2325507227 - - -
17 Hb_004648_070 0.2331917849 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_008103_100 0.2337957587 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
19 Hb_000610_060 0.2339085722 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_012258_020 0.2345911186 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000659_020 Hb_000659_020 Hb_007137_030 Hb_007137_030 Hb_000659_020--Hb_007137_030 Hb_003226_080 Hb_003226_080 Hb_000659_020--Hb_003226_080 Hb_001079_030 Hb_001079_030 Hb_000659_020--Hb_001079_030 Hb_093177_010 Hb_093177_010 Hb_000659_020--Hb_093177_010 Hb_001514_060 Hb_001514_060 Hb_000659_020--Hb_001514_060 Hb_008246_090 Hb_008246_090 Hb_000659_020--Hb_008246_090 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_011360_090 Hb_011360_090 Hb_003226_080--Hb_011360_090 Hb_003226_080--Hb_008246_090 Hb_004586_130 Hb_004586_130 Hb_003226_080--Hb_004586_130 Hb_006414_020 Hb_006414_020 Hb_003226_080--Hb_006414_020 Hb_001989_060 Hb_001989_060 Hb_003226_080--Hb_001989_060 Hb_009040_010 Hb_009040_010 Hb_003226_080--Hb_009040_010 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_004106_010 Hb_004106_010 Hb_093177_010--Hb_004106_010 Hb_158696_010 Hb_158696_010 Hb_093177_010--Hb_158696_010 Hb_093177_010--Hb_001608_030 Hb_093177_010--Hb_115158_010 Hb_001662_170 Hb_001662_170 Hb_093177_010--Hb_001662_170 Hb_162074_010 Hb_162074_010 Hb_001514_060--Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_001514_060--Hb_009897_020 Hb_000488_020 Hb_000488_020 Hb_001514_060--Hb_000488_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_008246_090--Hb_006414_020 Hb_000803_060 Hb_000803_060 Hb_008246_090--Hb_000803_060 Hb_001258_150 Hb_001258_150 Hb_008246_090--Hb_001258_150 Hb_056012_010 Hb_056012_010 Hb_008246_090--Hb_056012_010 Hb_181824_010 Hb_181824_010 Hb_008246_090--Hb_181824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.814234 35.8065 8.30553 11.6392 11.3668 2.1913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.507393 0.838032 0.440689 4.9269 0.653061

CAGE analysis