Hb_078160_010

Information

Type -
Description -
Location Contig78160: 1-555
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06000g
description hypothetical protein
nr
ID XP_012081236.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID U5G624
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06000g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078160_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_135569_010 0.2005654955 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
3 Hb_000540_010 0.2102601639 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
4 Hb_001079_030 0.2256425176 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
5 Hb_007423_030 0.22752489 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
6 Hb_005548_030 0.2276766932 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
7 Hb_006721_070 0.2311915314 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
8 Hb_000139_180 0.231457987 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
9 Hb_000991_050 0.2398662307 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
10 Hb_003090_150 0.2400766842 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
11 Hb_001196_080 0.2405236198 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_001767_040 0.241988998 - - dehydroascorbate reductase, putative [Ricinus communis]
13 Hb_001481_010 0.2438024762 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
14 Hb_000997_150 0.2438238458 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_025905_010 0.2444347895 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_002942_090 0.2583491424 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
17 Hb_000078_090 0.2612853363 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_069841_010 0.2614055569 - - resistance protein [Quercus suber]
19 Hb_000189_430 0.2633452669 - - unnamed protein product [Vitis vinifera]
20 Hb_032990_020 0.2661154283 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_078160_010 Hb_078160_010 Hb_135569_010 Hb_135569_010 Hb_078160_010--Hb_135569_010 Hb_000540_010 Hb_000540_010 Hb_078160_010--Hb_000540_010 Hb_001079_030 Hb_001079_030 Hb_078160_010--Hb_001079_030 Hb_007423_030 Hb_007423_030 Hb_078160_010--Hb_007423_030 Hb_005548_030 Hb_005548_030 Hb_078160_010--Hb_005548_030 Hb_006721_070 Hb_006721_070 Hb_078160_010--Hb_006721_070 Hb_170516_010 Hb_170516_010 Hb_135569_010--Hb_170516_010 Hb_002217_410 Hb_002217_410 Hb_135569_010--Hb_002217_410 Hb_135569_010--Hb_005548_030 Hb_032990_020 Hb_032990_020 Hb_135569_010--Hb_032990_020 Hb_115116_010 Hb_115116_010 Hb_135569_010--Hb_115116_010 Hb_001514_060 Hb_001514_060 Hb_000540_010--Hb_001514_060 Hb_000540_010--Hb_001079_030 Hb_000659_020 Hb_000659_020 Hb_000540_010--Hb_000659_020 Hb_000488_020 Hb_000488_020 Hb_000540_010--Hb_000488_020 Hb_000991_050 Hb_000991_050 Hb_000540_010--Hb_000991_050 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_001565_020 Hb_001565_020 Hb_007423_030--Hb_001565_020 Hb_006745_010 Hb_006745_010 Hb_007423_030--Hb_006745_010 Hb_003001_040 Hb_003001_040 Hb_007423_030--Hb_003001_040 Hb_128695_030 Hb_128695_030 Hb_007423_030--Hb_128695_030 Hb_002774_150 Hb_002774_150 Hb_007423_030--Hb_002774_150 Hb_004648_070 Hb_004648_070 Hb_007423_030--Hb_004648_070 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_006721_070--Hb_000991_050 Hb_021254_010 Hb_021254_010 Hb_006721_070--Hb_021254_010 Hb_000302_300 Hb_000302_300 Hb_006721_070--Hb_000302_300 Hb_006573_010 Hb_006573_010 Hb_006721_070--Hb_006573_010 Hb_000997_150 Hb_000997_150 Hb_006721_070--Hb_000997_150 Hb_004296_010 Hb_004296_010 Hb_006721_070--Hb_004296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.793972 5.74583 3.73718 1.9901 3.98321 0.0872004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.462827 0.294487 1.36421

CAGE analysis