Hb_074184_010

Information

Type -
Description -
Location Contig74184: 50-589
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_002517675.1
description eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVA6
description Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_0901430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56463: 469-574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074184_010 0.0 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
2 Hb_008203_020 0.1492615173 - - protein kinase, putative [Ricinus communis]
3 Hb_029689_010 0.1760964409 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_065755_020 0.1866904873 - - choline monooxygenase, putative [Ricinus communis]
5 Hb_032202_050 0.1877296391 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
6 Hb_000221_230 0.1955542046 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
7 Hb_004495_010 0.1988568981 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
8 Hb_005548_030 0.199126998 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
9 Hb_000540_220 0.200173383 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
10 Hb_183192_010 0.2023146552 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
11 Hb_163508_010 0.204694763 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
12 Hb_000692_120 0.2072635752 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
13 Hb_002965_070 0.2110195028 - - PREDICTED: extensin [Jatropha curcas]
14 Hb_027402_040 0.2142225422 - - Thioredoxin II, putative [Ricinus communis]
15 Hb_015928_020 0.2169441627 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_102437_010 0.2204664601 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
17 Hb_007188_060 0.2242252927 - - -
18 Hb_001196_080 0.224667987 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
19 Hb_005394_010 0.2247689203 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
20 Hb_002374_330 0.2259859695 - - -

Gene co-expression network

sample Hb_074184_010 Hb_074184_010 Hb_008203_020 Hb_008203_020 Hb_074184_010--Hb_008203_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_114674_010 Hb_114674_010 Hb_008203_020--Hb_114674_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_115513_030 Hb_115513_030 Hb_008203_020--Hb_115513_030 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_015928_020 Hb_015928_020 Hb_008203_020--Hb_015928_020 Hb_000059_260 Hb_000059_260 Hb_029689_010--Hb_000059_260 Hb_002311_150 Hb_002311_150 Hb_029689_010--Hb_002311_150 Hb_183192_010 Hb_183192_010 Hb_029689_010--Hb_183192_010 Hb_007120_010 Hb_007120_010 Hb_029689_010--Hb_007120_010 Hb_033149_020 Hb_033149_020 Hb_029689_010--Hb_033149_020 Hb_095471_020 Hb_095471_020 Hb_065755_020--Hb_095471_020 Hb_078954_010 Hb_078954_010 Hb_065755_020--Hb_078954_010 Hb_046109_010 Hb_046109_010 Hb_065755_020--Hb_046109_010 Hb_004667_040 Hb_004667_040 Hb_065755_020--Hb_004667_040 Hb_065755_020--Hb_032202_050 Hb_002965_070 Hb_002965_070 Hb_065755_020--Hb_002965_070 Hb_005394_010 Hb_005394_010 Hb_032202_050--Hb_005394_010 Hb_005496_160 Hb_005496_160 Hb_032202_050--Hb_005496_160 Hb_033930_010 Hb_033930_010 Hb_032202_050--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_032202_050--Hb_011671_110 Hb_002609_190 Hb_002609_190 Hb_032202_050--Hb_002609_190 Hb_003216_050 Hb_003216_050 Hb_032202_050--Hb_003216_050 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_004586_130 Hb_004586_130 Hb_000221_230--Hb_004586_130 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_004495_010--Hb_183192_010 Hb_000521_180 Hb_000521_180 Hb_004495_010--Hb_000521_180 Hb_123475_020 Hb_123475_020 Hb_004495_010--Hb_123475_020 Hb_004495_010--Hb_065755_020 Hb_009979_010 Hb_009979_010 Hb_004495_010--Hb_009979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7173 50.5691 47.1674 15.6623 9.19776 9.25106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.388466 4.27202 1.92701

CAGE analysis