Hb_007188_060

Information

Type -
Description -
Location Contig7188: 78077-78262
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007188_060 0.0 - - -
2 Hb_000540_220 0.1915386523 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
3 Hb_163508_010 0.1989303297 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_008203_020 0.2083001042 - - protein kinase, putative [Ricinus communis]
5 Hb_000164_090 0.2133218123 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
6 Hb_055339_010 0.2227532387 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
7 Hb_074184_010 0.2242252927 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
8 Hb_049884_010 0.2256330966 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_115513_030 0.230433751 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
10 Hb_002897_020 0.2416443459 - - phosphate transporter [Manihot esculenta]
11 Hb_000172_490 0.2551929171 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
12 Hb_011161_030 0.2632946328 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
13 Hb_004800_210 0.2736229229 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
14 Hb_114250_010 0.2767288478 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027402_040 0.2813004744 - - Thioredoxin II, putative [Ricinus communis]
16 Hb_000221_230 0.2821681413 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
17 Hb_183192_010 0.2824467376 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
18 Hb_123475_020 0.2842697549 - - -
19 Hb_014361_050 0.2851275784 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
20 Hb_114674_010 0.2911365371 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_007188_060 Hb_007188_060 Hb_000540_220 Hb_000540_220 Hb_007188_060--Hb_000540_220 Hb_163508_010 Hb_163508_010 Hb_007188_060--Hb_163508_010 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_000164_090 Hb_000164_090 Hb_007188_060--Hb_000164_090 Hb_055339_010 Hb_055339_010 Hb_007188_060--Hb_055339_010 Hb_074184_010 Hb_074184_010 Hb_007188_060--Hb_074184_010 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000540_220--Hb_000164_090 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_027402_040 Hb_027402_040 Hb_163508_010--Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_163508_010--Hb_003119_050 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_008203_020--Hb_074184_010 Hb_114674_010 Hb_114674_010 Hb_008203_020--Hb_114674_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_115513_030 Hb_115513_030 Hb_008203_020--Hb_115513_030 Hb_015928_020 Hb_015928_020 Hb_008203_020--Hb_015928_020 Hb_000164_090--Hb_163508_010 Hb_002897_020 Hb_002897_020 Hb_000164_090--Hb_002897_020 Hb_004204_180 Hb_004204_180 Hb_000164_090--Hb_004204_180 Hb_004800_210 Hb_004800_210 Hb_000164_090--Hb_004800_210 Hb_000997_010 Hb_000997_010 Hb_055339_010--Hb_000997_010 Hb_076233_020 Hb_076233_020 Hb_055339_010--Hb_076233_020 Hb_014361_050 Hb_014361_050 Hb_055339_010--Hb_014361_050 Hb_004570_050 Hb_004570_050 Hb_055339_010--Hb_004570_050 Hb_036693_010 Hb_036693_010 Hb_055339_010--Hb_036693_010 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.11 441.465 582.024 47.4449 30.3182 171.68
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 9.64163 0 6.69473 0

CAGE analysis