Hb_004570_050

Information

Type -
Description -
Location Contig4570: 53215-55696
Sequence    

Annotation

kegg
ID rcu:RCOM_0033790
description kinase, putative (EC:2.7.11.30)
nr
ID XP_002529929.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8VYY5
description Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana GN=NCRK PE=1 SV=1
trembl
ID B9SVB0
description Kinase, putative OS=Ricinus communis GN=RCOM_0033790 PE=3 SV=1
Gene Ontology
ID GO:0005488
description receptor-like serine threonine-protein kinase ncrk isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43488: 54464-55600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004570_050 0.0 - - kinase, putative [Ricinus communis]
2 Hb_170532_010 0.1288664342 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_124961_010 0.1366977694 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
4 Hb_006816_340 0.1820150325 - - -
5 Hb_182249_010 0.1839541731 - - -
6 Hb_000179_180 0.1933475131 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
7 Hb_005155_020 0.1974276884 - - -
8 Hb_000997_010 0.1975958207 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
9 Hb_171619_010 0.2061192123 - - protein binding protein, putative [Ricinus communis]
10 Hb_001916_060 0.2078669739 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
11 Hb_002783_010 0.2081243876 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
12 Hb_016006_010 0.2103459821 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_118720_010 0.2114729912 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
14 Hb_055339_010 0.2121852211 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
15 Hb_078568_010 0.2122774508 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
16 Hb_000099_090 0.2154543535 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
17 Hb_076233_020 0.2158225501 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
18 Hb_000160_150 0.2176907825 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
19 Hb_001442_030 0.2190959548 - - Peroxisome biogenesis factor [Medicago truncatula]
20 Hb_068804_080 0.2195918474 - - PREDICTED: protein BRICK 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004570_050 Hb_004570_050 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_170532_010--Hb_124961_010 Hb_171619_010 Hb_171619_010 Hb_170532_010--Hb_171619_010 Hb_000160_150 Hb_000160_150 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_124961_010--Hb_171619_010 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010 Hb_006816_340--Hb_124961_010 Hb_006816_340--Hb_170532_010 Hb_006816_340--Hb_007136_020 Hb_003895_030 Hb_003895_030 Hb_006816_340--Hb_003895_030 Hb_006816_340--Hb_171619_010 Hb_004052_160 Hb_004052_160 Hb_182249_010--Hb_004052_160 Hb_000122_010 Hb_000122_010 Hb_182249_010--Hb_000122_010 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_009393_200 Hb_009393_200 Hb_182249_010--Hb_009393_200 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_000179_180--Hb_009393_200 Hb_001484_100 Hb_001484_100 Hb_000179_180--Hb_001484_100 Hb_000169_190 Hb_000169_190 Hb_005155_020--Hb_000169_190 Hb_036693_010 Hb_036693_010 Hb_005155_020--Hb_036693_010 Hb_005517_010 Hb_005517_010 Hb_005155_020--Hb_005517_010 Hb_000099_090 Hb_000099_090 Hb_005155_020--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_005155_020--Hb_012184_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14644 1.56063 1.79541 0.916043 0.809449 2.24169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111184 0.174879 0.160122 0.0704599 0

CAGE analysis