Hb_004052_160

Information

Type -
Description -
Location Contig4052: 165280-166131
Sequence    

Annotation

kegg
ID obr:102717819
description pentatricopeptide repeat-containing protein At5g65560-like
nr
ID 4OZS
description Chain A, Rna Binding Protein
swissprot
ID Q9SZ52
description Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
trembl
ID J3MS03
description Uncharacterized protein OS=Oryza brachyantha GN=OB08G18820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_160 0.0 - - Chain A, Rna Binding Protein
2 Hb_182249_010 0.1734128628 - - -
3 Hb_009393_200 0.1997291795 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
4 Hb_013358_100 0.210766543 - - unknown [Medicago truncatula]
5 Hb_002196_010 0.2211167461 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
6 Hb_040747_010 0.2234987164 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
7 Hb_000122_010 0.227204923 - - amino acid transporter, putative [Ricinus communis]
8 Hb_177152_010 0.2275399714 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
9 Hb_001357_330 0.2278829978 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
10 Hb_007765_070 0.2289895047 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
11 Hb_004570_050 0.2302113212 - - kinase, putative [Ricinus communis]
12 Hb_001935_090 0.2348929835 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
13 Hb_023051_010 0.2367694854 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
14 Hb_035436_010 0.2381823981 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
15 Hb_000179_180 0.2384949589 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
16 Hb_006286_010 0.2391083943 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
17 Hb_078568_010 0.2411117413 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
18 Hb_000589_060 0.2438973973 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
19 Hb_025964_040 0.2446008344 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
20 Hb_000997_010 0.2478551298 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_160 Hb_004052_160 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010 Hb_182249_010--Hb_000122_010 Hb_000179_180 Hb_000179_180 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_004570_050 Hb_004570_050 Hb_182249_010--Hb_004570_050 Hb_182249_010--Hb_009393_200 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_001622_010 Hb_001622_010 Hb_002196_010--Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_002196_010--Hb_005464_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_001865_040 Hb_001865_040 Hb_002196_010--Hb_001865_040 Hb_002196_010--Hb_009393_200 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_000122_010--Hb_007163_060 Hb_000122_010--Hb_008511_060 Hb_000122_010--Hb_010053_040 Hb_005656_080 Hb_005656_080 Hb_000122_010--Hb_005656_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.77331 7.03265 10.1186 10.2169 0.996146 7.91493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.559152 0.29313 1.06634 0.414409 0.789283

CAGE analysis