Hb_002196_010

Information

Type -
Description -
Location Contig2196: 82451-85401
Sequence    

Annotation

kegg
ID pmum:103320174
description proline-rich receptor-like protein kinase PERK15
nr
ID XP_012077569.1
description PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
swissprot
ID Q8GX23
description Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1
trembl
ID M5XQ26
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023861mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22593: 83435-88205 , PASA_asmbl_22594: 82350-88205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002196_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
2 Hb_001622_010 0.1599445951 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_005464_030 0.1613157764 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_006420_020 0.1897352556 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
5 Hb_080147_080 0.1903466925 - - peroxiredoxin, putative [Ricinus communis]
6 Hb_001865_040 0.1961317682 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_009393_200 0.2012127451 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
8 Hb_000438_150 0.2032967193 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
9 Hb_003835_090 0.203448238 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
10 Hb_006286_010 0.2075042207 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
11 Hb_005000_300 0.2136383398 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
12 Hb_006711_070 0.2148243793 - - hypothetical protein RCOM_1336320 [Ricinus communis]
13 Hb_178127_010 0.2192956046 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
14 Hb_001277_190 0.2199388087 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
15 Hb_004052_160 0.2211167461 - - Chain A, Rna Binding Protein
16 Hb_073171_090 0.2216981908 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
17 Hb_003001_040 0.2235579056 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
18 Hb_000836_370 0.2241356644 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_075230_010 0.2243334386 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
20 Hb_009476_150 0.2248535077 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]

Gene co-expression network

sample Hb_002196_010 Hb_002196_010 Hb_001622_010 Hb_001622_010 Hb_002196_010--Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_002196_010--Hb_005464_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_001865_040 Hb_001865_040 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200 Hb_001622_010--Hb_005464_030 Hb_010531_050 Hb_010531_050 Hb_001622_010--Hb_010531_050 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_005464_030--Hb_001865_040 Hb_002027_380 Hb_002027_380 Hb_005464_030--Hb_002027_380 Hb_005464_030--Hb_010531_050 Hb_002326_070 Hb_002326_070 Hb_005464_030--Hb_002326_070 Hb_000571_150 Hb_000571_150 Hb_006420_020--Hb_000571_150 Hb_006420_020--Hb_080147_080 Hb_000878_100 Hb_000878_100 Hb_006420_020--Hb_000878_100 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_010831_020 Hb_010831_020 Hb_006420_020--Hb_010831_020 Hb_006745_010 Hb_006745_010 Hb_006420_020--Hb_006745_010 Hb_075449_020 Hb_075449_020 Hb_080147_080--Hb_075449_020 Hb_128376_010 Hb_128376_010 Hb_080147_080--Hb_128376_010 Hb_000390_220 Hb_000390_220 Hb_080147_080--Hb_000390_220 Hb_080147_080--Hb_000878_100 Hb_002742_080 Hb_002742_080 Hb_080147_080--Hb_002742_080 Hb_005333_030 Hb_005333_030 Hb_001865_040--Hb_005333_030 Hb_000336_270 Hb_000336_270 Hb_001865_040--Hb_000336_270 Hb_001865_040--Hb_002742_080 Hb_001882_040 Hb_001882_040 Hb_001865_040--Hb_001882_040 Hb_002783_010 Hb_002783_010 Hb_001865_040--Hb_002783_010 Hb_002081_120 Hb_002081_120 Hb_001865_040--Hb_002081_120 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61553 1.71475 0.830824 1.33264 0.610533 0.603317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134219 0.14081 0.100154 0.0770224 0.148826

CAGE analysis