Hb_002027_380

Information

Type -
Description -
Location Contig2027: 224998-226464
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13030g
description POPTRDRAFT_1099323, POPTRDRAFT_898632; hypothetical protein
nr
ID XP_012092358.1
description PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067JCI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22022 PE=3 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20724: 225041-226213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_380 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
2 Hb_003640_020 0.1074947686 - - pelota, putative [Ricinus communis]
3 Hb_130389_010 0.1265090619 - - PREDICTED: la protein 1 [Jatropha curcas]
4 Hb_000120_420 0.1357260749 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
5 Hb_000836_370 0.1373114615 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
6 Hb_005203_020 0.1439765464 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
7 Hb_001369_770 0.1483654224 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
8 Hb_000336_110 0.1484981559 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_005054_310 0.1491023556 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_004218_090 0.150066688 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_127599_010 0.1503742327 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
12 Hb_000599_130 0.1512902326 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
13 Hb_000264_080 0.1521944958 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
14 Hb_008406_040 0.1543665769 - - -
15 Hb_001484_100 0.1552725077 - - PREDICTED: cyanate hydratase [Jatropha curcas]
16 Hb_005000_300 0.1564610078 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
17 Hb_085364_010 0.157105174 - - PREDICTED: nicalin-1-like [Populus euphratica]
18 Hb_005333_030 0.1595350503 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
19 Hb_003226_110 0.1606408758 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
20 Hb_000152_640 0.1608384425 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_380 Hb_002027_380 Hb_003640_020 Hb_003640_020 Hb_002027_380--Hb_003640_020 Hb_130389_010 Hb_130389_010 Hb_002027_380--Hb_130389_010 Hb_000120_420 Hb_000120_420 Hb_002027_380--Hb_000120_420 Hb_000836_370 Hb_000836_370 Hb_002027_380--Hb_000836_370 Hb_005203_020 Hb_005203_020 Hb_002027_380--Hb_005203_020 Hb_001369_770 Hb_001369_770 Hb_002027_380--Hb_001369_770 Hb_056987_010 Hb_056987_010 Hb_003640_020--Hb_056987_010 Hb_073171_090 Hb_073171_090 Hb_003640_020--Hb_073171_090 Hb_085364_010 Hb_085364_010 Hb_003640_020--Hb_085364_010 Hb_167234_010 Hb_167234_010 Hb_003640_020--Hb_167234_010 Hb_005694_010 Hb_005694_010 Hb_003640_020--Hb_005694_010 Hb_007982_050 Hb_007982_050 Hb_130389_010--Hb_007982_050 Hb_000526_030 Hb_000526_030 Hb_130389_010--Hb_000526_030 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_004319_070 Hb_004319_070 Hb_130389_010--Hb_004319_070 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_005054_310 Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100 Hb_005203_020--Hb_001369_770 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_002942_110 Hb_002942_110 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_001369_770--Hb_004195_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61302 12.1999 4.09596 4.23021 4.10217 3.49241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91669 1.46885 0.213785 3.96153 0.633716

CAGE analysis