Hb_010531_050

Information

Type -
Description -
Location Contig10531: 42884-60016
Sequence    

Annotation

kegg
ID egr:104445959
description uncharacterized LOC104445959
nr
ID XP_012070035.1
description PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A059C0H4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00393 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01812: 52848-53526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010531_050 0.0 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
2 Hb_000997_410 0.1532164653 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
3 Hb_001622_010 0.167123862 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_031527_070 0.1722939646 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
5 Hb_114984_010 0.1861795719 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000984_250 0.1862126301 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
7 Hb_005464_030 0.1873513073 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_006615_100 0.1901981299 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
9 Hb_001865_040 0.1904027088 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_005333_030 0.2028098129 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
11 Hb_002232_150 0.2080369788 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
12 Hb_002035_090 0.2117257814 - - -
13 Hb_007157_060 0.2120645185 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_001952_130 0.2123265743 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
15 Hb_001195_150 0.2127428968 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
16 Hb_143960_010 0.2162725784 - - -
17 Hb_128376_010 0.2174196063 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000733_050 0.2174285953 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
19 Hb_000098_020 0.2193508043 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
20 Hb_000317_060 0.2205827797 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]

Gene co-expression network

sample Hb_010531_050 Hb_010531_050 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_001622_010 Hb_001622_010 Hb_010531_050--Hb_001622_010 Hb_031527_070 Hb_031527_070 Hb_010531_050--Hb_031527_070 Hb_114984_010 Hb_114984_010 Hb_010531_050--Hb_114984_010 Hb_000984_250 Hb_000984_250 Hb_010531_050--Hb_000984_250 Hb_005464_030 Hb_005464_030 Hb_010531_050--Hb_005464_030 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_000997_410--Hb_114984_010 Hb_006615_100 Hb_006615_100 Hb_000997_410--Hb_006615_100 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_009620_030 Hb_009620_030 Hb_000997_410--Hb_009620_030 Hb_001622_010--Hb_005464_030 Hb_002196_010 Hb_002196_010 Hb_001622_010--Hb_002196_010 Hb_001865_040 Hb_001865_040 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_005333_030 Hb_005333_030 Hb_031527_070--Hb_005333_030 Hb_003025_050 Hb_003025_050 Hb_031527_070--Hb_003025_050 Hb_003096_040 Hb_003096_040 Hb_031527_070--Hb_003096_040 Hb_002890_100 Hb_002890_100 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_114984_010--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_001952_130 Hb_001952_130 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_005464_030--Hb_002196_010 Hb_005464_030--Hb_001865_040 Hb_002027_380 Hb_002027_380 Hb_005464_030--Hb_002027_380 Hb_002326_070 Hb_002326_070 Hb_005464_030--Hb_002326_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293682 0.151259 0.0786008 0.12265 0.127143 0.112229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00789323 0.00621199 0.0119691 0.0983068 0.0133588

CAGE analysis