Hb_001952_130

Information

Type -
Description -
Location Contig1952: 133794-134675
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31910g
description POPTRDRAFT_549850; phosphate-responsive family protein
nr
ID XP_012069149.1
description PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
swissprot
ID Q9FE06
description Protein EXORDIUM-like 2 OS=Arabidopsis thaliana GN=EXL2 PE=2 SV=1
trembl
ID A0A067L8T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24914 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_130 0.0 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
2 Hb_000984_250 0.1623037325 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
3 Hb_003388_050 0.1659158819 - - -
4 Hb_001675_120 0.1837325204 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
5 Hb_004525_070 0.1880854931 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_006915_020 0.1913897621 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_031527_070 0.193299841 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
8 Hb_000106_020 0.1952453348 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
9 Hb_003097_080 0.1958023333 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
10 Hb_000733_050 0.1981316472 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
11 Hb_143960_010 0.1991477424 - - -
12 Hb_000221_120 0.1999868443 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_007456_010 0.2018079222 - - hypothetical protein L484_003540 [Morus notabilis]
14 Hb_000453_140 0.2039154593 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
15 Hb_000021_020 0.2062702062 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
16 Hb_114984_010 0.2063170206 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002890_100 0.2079065164 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
18 Hb_000859_050 0.2079523893 - - hypothetical protein JCGZ_17054 [Jatropha curcas]
19 Hb_000086_560 0.2083937136 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
20 Hb_006083_060 0.2107893042 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001952_130 Hb_001952_130 Hb_000984_250 Hb_000984_250 Hb_001952_130--Hb_000984_250 Hb_003388_050 Hb_003388_050 Hb_001952_130--Hb_003388_050 Hb_001675_120 Hb_001675_120 Hb_001952_130--Hb_001675_120 Hb_004525_070 Hb_004525_070 Hb_001952_130--Hb_004525_070 Hb_006915_020 Hb_006915_020 Hb_001952_130--Hb_006915_020 Hb_031527_070 Hb_031527_070 Hb_001952_130--Hb_031527_070 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_018790_070 Hb_018790_070 Hb_003388_050--Hb_018790_070 Hb_050847_020 Hb_050847_020 Hb_003388_050--Hb_050847_020 Hb_001102_080 Hb_001102_080 Hb_003388_050--Hb_001102_080 Hb_000270_460 Hb_000270_460 Hb_003388_050--Hb_000270_460 Hb_000011_360 Hb_000011_360 Hb_003388_050--Hb_000011_360 Hb_002045_150 Hb_002045_150 Hb_003388_050--Hb_002045_150 Hb_000003_150 Hb_000003_150 Hb_001675_120--Hb_000003_150 Hb_000197_050 Hb_000197_050 Hb_001675_120--Hb_000197_050 Hb_001675_120--Hb_000984_250 Hb_001675_120--Hb_003388_050 Hb_002498_280 Hb_002498_280 Hb_001675_120--Hb_002498_280 Hb_001662_040 Hb_001662_040 Hb_004525_070--Hb_001662_040 Hb_009265_050 Hb_009265_050 Hb_004525_070--Hb_009265_050 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_001373_160 Hb_001373_160 Hb_004525_070--Hb_001373_160 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_005333_030 Hb_005333_030 Hb_031527_070--Hb_005333_030 Hb_003025_050 Hb_003025_050 Hb_031527_070--Hb_003025_050 Hb_003096_040 Hb_003096_040 Hb_031527_070--Hb_003096_040 Hb_002890_100 Hb_002890_100 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.585 49.8346 93.7912 54.4616 129.897 79.9533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1091 8.40907 13.2931 154.743 14.5733

CAGE analysis