Hb_004525_070

Information

Type -
Description -
Location Contig4525: 42864-46705
Sequence    

Annotation

kegg
ID rcu:RCOM_0536120
description abhydrolase domain containing, putative
nr
ID XP_002521575.1
description abhydrolase domain containing, putative [Ricinus communis]
swissprot
ID G5EBI4
description Epoxide hydrolase 1 OS=Caenorhabditis elegans GN=ceeh-1 PE=1 SV=1
trembl
ID B9S6F6
description Abhydrolase domain containing, putative OS=Ricinus communis GN=RCOM_0536120 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_070 0.0 - - abhydrolase domain containing, putative [Ricinus communis]
2 Hb_001662_040 0.1223593139 - - DNA helicase, putative [Ricinus communis]
3 Hb_009265_050 0.1242056639 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
4 Hb_033554_020 0.1276038887 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
5 Hb_002291_060 0.1283556382 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
6 Hb_009659_030 0.1334476634 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
7 Hb_001373_160 0.1349181944 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
8 Hb_000197_050 0.1386967416 - - AGPase large subunit protein [Hevea brasiliensis]
9 Hb_000134_250 0.1404558039 - - protein with unknown function [Ricinus communis]
10 Hb_011344_070 0.141840498 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
11 Hb_003750_060 0.1496244173 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
12 Hb_006658_030 0.1498101259 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
13 Hb_000139_220 0.1511179774 - - leucine rich repeat-containing protein, putative [Ricinus communis]
14 Hb_001807_030 0.1520227408 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
15 Hb_010287_030 0.1527207883 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000371_010 0.152885399 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
17 Hb_004449_120 0.1561472315 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
18 Hb_000985_040 0.157295591 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
19 Hb_005333_160 0.1574891304 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
20 Hb_002890_100 0.1601041817 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_070 Hb_004525_070 Hb_001662_040 Hb_001662_040 Hb_004525_070--Hb_001662_040 Hb_009265_050 Hb_009265_050 Hb_004525_070--Hb_009265_050 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_001373_160 Hb_001373_160 Hb_004525_070--Hb_001373_160 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000002_120 Hb_000002_120 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_000098_140 Hb_000098_140 Hb_001662_040--Hb_000098_140 Hb_000077_010 Hb_000077_010 Hb_009265_050--Hb_000077_010 Hb_016734_090 Hb_016734_090 Hb_009265_050--Hb_016734_090 Hb_001807_030 Hb_001807_030 Hb_009265_050--Hb_001807_030 Hb_006658_030 Hb_006658_030 Hb_009265_050--Hb_006658_030 Hb_006915_020 Hb_006915_020 Hb_009265_050--Hb_006915_020 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010 Hb_000077_120 Hb_000077_120 Hb_002291_060--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_002291_060--Hb_044155_010 Hb_000139_220 Hb_000139_220 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010 Hb_075203_010 Hb_075203_010 Hb_009659_030--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_009659_030--Hb_000134_250 Hb_009659_030--Hb_000994_020 Hb_011344_070 Hb_011344_070 Hb_009659_030--Hb_011344_070 Hb_000940_050 Hb_000940_050 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_001373_160--Hb_010287_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40417 4.01366 7.93309 1.7373 5.20073 2.83538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.725592 1.05174 0.915167 5.5518 1.68982

CAGE analysis