Hb_001807_030

Information

Type -
Description -
Location Contig1807: 21850-31145
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06620g
description POPTRDRAFT_758677; hypothetical protein
nr
ID XP_012079548.1
description PREDICTED: CDT1-like protein b [Jatropha curcas]
swissprot
ID Q9M1S9
description CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1
trembl
ID A0A067LBH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17428 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17477: 22113-22298 , PASA_asmbl_17478: 22573-23501 , PASA_asmbl_17479: 23574-27987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001807_030 0.0 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
2 Hb_009265_050 0.1153456408 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
3 Hb_001269_200 0.1187885313 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
4 Hb_001807_010 0.1201329712 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
5 Hb_000173_150 0.1218317644 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
6 Hb_006915_020 0.1293328855 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_000165_140 0.1304592782 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
8 Hb_000045_320 0.135196835 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
9 Hb_005610_080 0.1431048283 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000661_020 0.1431074944 - - BnaC08g27190D [Brassica napus]
11 Hb_000625_120 0.144681241 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_003430_030 0.1447282411 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
13 Hb_002739_130 0.1458518962 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
14 Hb_002947_040 0.1460888851 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
15 Hb_006658_030 0.1466254703 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
16 Hb_016734_090 0.1469382987 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
17 Hb_002890_150 0.1499960936 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
18 Hb_001117_190 0.150124722 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
19 Hb_004631_190 0.1507447041 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_005054_190 0.1511803284 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001807_030 Hb_001807_030 Hb_009265_050 Hb_009265_050 Hb_001807_030--Hb_009265_050 Hb_001269_200 Hb_001269_200 Hb_001807_030--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_001807_030--Hb_001807_010 Hb_000173_150 Hb_000173_150 Hb_001807_030--Hb_000173_150 Hb_006915_020 Hb_006915_020 Hb_001807_030--Hb_006915_020 Hb_000165_140 Hb_000165_140 Hb_001807_030--Hb_000165_140 Hb_000077_010 Hb_000077_010 Hb_009265_050--Hb_000077_010 Hb_016734_090 Hb_016734_090 Hb_009265_050--Hb_016734_090 Hb_006658_030 Hb_006658_030 Hb_009265_050--Hb_006658_030 Hb_009265_050--Hb_006915_020 Hb_004525_070 Hb_004525_070 Hb_009265_050--Hb_004525_070 Hb_001269_200--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_001269_200--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_001269_200--Hb_011918_050 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_002739_130 Hb_002739_130 Hb_001269_200--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_001269_200--Hb_006452_160 Hb_002928_010 Hb_002928_010 Hb_001807_010--Hb_002928_010 Hb_001807_010--Hb_001269_200 Hb_000139_190 Hb_000139_190 Hb_001807_010--Hb_000139_190 Hb_001807_010--Hb_039605_010 Hb_000416_050 Hb_000416_050 Hb_001807_010--Hb_000416_050 Hb_004631_190 Hb_004631_190 Hb_001807_010--Hb_004631_190 Hb_000173_150--Hb_000165_140 Hb_058551_010 Hb_058551_010 Hb_000173_150--Hb_058551_010 Hb_000230_430 Hb_000230_430 Hb_000173_150--Hb_000230_430 Hb_000069_590 Hb_000069_590 Hb_000173_150--Hb_000069_590 Hb_000173_150--Hb_002739_130 Hb_000735_050 Hb_000735_050 Hb_000173_150--Hb_000735_050 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_000165_140--Hb_027380_030 Hb_000165_140--Hb_016734_090 Hb_000599_170 Hb_000599_170 Hb_000165_140--Hb_000599_170 Hb_000165_140--Hb_002092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.9266 6.7562 9.29889 2.54308 7.85985 4.64044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40821 0.877091 2.73753 3.98641 1.20985

CAGE analysis