Hb_009265_050

Information

Type -
Description -
Location Contig9265: 75922-85611
Sequence    

Annotation

kegg
ID rcu:RCOM_0342850
description glucosidase II beta subunit, putative
nr
ID XP_012091718.1
description PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
swissprot
ID Q9FM96
description Glucosidase 2 subunit beta OS=Arabidopsis thaliana GN=PSL4 PE=2 SV=1
trembl
ID A0A067JNG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21520 PE=4 SV=1
Gene Ontology
ID GO:0006807
description glucosidase 2 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62711: 79361-85410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009265_050 0.0 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
2 Hb_000077_010 0.1057303869 - - unnamed protein product [Vitis vinifera]
3 Hb_016734_090 0.1124865776 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
4 Hb_001807_030 0.1153456408 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
5 Hb_006658_030 0.1159871054 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
6 Hb_006915_020 0.1183391779 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_004525_070 0.1242056639 - - abhydrolase domain containing, putative [Ricinus communis]
8 Hb_002092_100 0.1245748405 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_002890_150 0.1258293069 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
10 Hb_002739_130 0.1283904635 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
11 Hb_000156_160 0.1289974243 - - PREDICTED: urease accessory protein G [Jatropha curcas]
12 Hb_003849_040 0.1291789873 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
13 Hb_027380_030 0.1294481643 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
14 Hb_000453_140 0.1296869444 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
15 Hb_000661_020 0.1301491288 - - BnaC08g27190D [Brassica napus]
16 Hb_002291_060 0.1383854424 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_000599_170 0.1392511621 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
18 Hb_001269_200 0.1394579683 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
19 Hb_000076_260 0.1398091499 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
20 Hb_000985_040 0.1425645385 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_009265_050 Hb_009265_050 Hb_000077_010 Hb_000077_010 Hb_009265_050--Hb_000077_010 Hb_016734_090 Hb_016734_090 Hb_009265_050--Hb_016734_090 Hb_001807_030 Hb_001807_030 Hb_009265_050--Hb_001807_030 Hb_006658_030 Hb_006658_030 Hb_009265_050--Hb_006658_030 Hb_006915_020 Hb_006915_020 Hb_009265_050--Hb_006915_020 Hb_004525_070 Hb_004525_070 Hb_009265_050--Hb_004525_070 Hb_000436_100 Hb_000436_100 Hb_000077_010--Hb_000436_100 Hb_000077_010--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_000077_010--Hb_002739_130 Hb_004079_120 Hb_004079_120 Hb_000077_010--Hb_004079_120 Hb_000156_160 Hb_000156_160 Hb_000077_010--Hb_000156_160 Hb_000077_010--Hb_006658_030 Hb_016734_090--Hb_002739_130 Hb_011918_050 Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_001807_030--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_001807_030--Hb_001807_010 Hb_000173_150 Hb_000173_150 Hb_001807_030--Hb_000173_150 Hb_001807_030--Hb_006915_020 Hb_000165_140 Hb_000165_140 Hb_001807_030--Hb_000165_140 Hb_001952_120 Hb_001952_120 Hb_006658_030--Hb_001952_120 Hb_105641_010 Hb_105641_010 Hb_006658_030--Hb_105641_010 Hb_007929_080 Hb_007929_080 Hb_006658_030--Hb_007929_080 Hb_006658_030--Hb_000661_020 Hb_002311_310 Hb_002311_310 Hb_006658_030--Hb_002311_310 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_001662_040 Hb_001662_040 Hb_004525_070--Hb_001662_040 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_001373_160 Hb_001373_160 Hb_004525_070--Hb_001373_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.803 30.7084 63.3015 13.0811 54.0692 29.6289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39838 7.34102 8.9664 23.7673 19.0365

CAGE analysis