Hb_013016_020

Information

Type -
Description -
Location Contig13016: 8127-11198
Sequence    

Annotation

kegg
ID rcu:RCOM_0768900
description Disease resistance protein RPS2, putative
nr
ID XP_002531643.1
description Disease resistance protein RPS2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T074
description Disease resistance protein RPS2, putative OS=Ricinus communis GN=RCOM_0768900 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09054: 8876-10924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013016_020 0.0 - - Disease resistance protein RPS2, putative [Ricinus communis]
2 Hb_000139_230 0.1384679125 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
3 Hb_000538_260 0.1389395409 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
4 Hb_000317_060 0.1449030606 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
5 Hb_006915_020 0.1486421384 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
6 Hb_000156_160 0.1513107998 - - PREDICTED: urease accessory protein G [Jatropha curcas]
7 Hb_000859_050 0.151689595 - - hypothetical protein JCGZ_17054 [Jatropha curcas]
8 Hb_001508_020 0.1528083003 - - myosin vIII, putative [Ricinus communis]
9 Hb_003529_130 0.1548722153 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
10 Hb_000985_040 0.1568743436 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
11 Hb_002092_100 0.1576094795 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
12 Hb_009265_050 0.1588210654 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
13 Hb_008103_080 0.1628080726 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_000922_140 0.1630587079 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
15 Hb_002681_170 0.1648456776 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_018202_050 0.165901897 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
17 Hb_016734_090 0.1667781315 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
18 Hb_000566_100 0.1692475599 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
19 Hb_048476_150 0.1699102466 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
20 Hb_000070_030 0.1707648756 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]

Gene co-expression network

sample Hb_013016_020 Hb_013016_020 Hb_000139_230 Hb_000139_230 Hb_013016_020--Hb_000139_230 Hb_000538_260 Hb_000538_260 Hb_013016_020--Hb_000538_260 Hb_000317_060 Hb_000317_060 Hb_013016_020--Hb_000317_060 Hb_006915_020 Hb_006915_020 Hb_013016_020--Hb_006915_020 Hb_000156_160 Hb_000156_160 Hb_013016_020--Hb_000156_160 Hb_000859_050 Hb_000859_050 Hb_013016_020--Hb_000859_050 Hb_001021_220 Hb_001021_220 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_065525_130 Hb_065525_130 Hb_000538_260--Hb_065525_130 Hb_003638_010 Hb_003638_010 Hb_000538_260--Hb_003638_010 Hb_003849_040 Hb_003849_040 Hb_000538_260--Hb_003849_040 Hb_000538_260--Hb_000156_160 Hb_018202_050 Hb_018202_050 Hb_000538_260--Hb_018202_050 Hb_000985_040 Hb_000985_040 Hb_000538_260--Hb_000985_040 Hb_001953_150 Hb_001953_150 Hb_000317_060--Hb_001953_150 Hb_005054_190 Hb_005054_190 Hb_000317_060--Hb_005054_190 Hb_080147_040 Hb_080147_040 Hb_000317_060--Hb_080147_040 Hb_000922_140 Hb_000922_140 Hb_000317_060--Hb_000922_140 Hb_003430_030 Hb_003430_030 Hb_000317_060--Hb_003430_030 Hb_011918_050 Hb_011918_050 Hb_000317_060--Hb_011918_050 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_000156_160--Hb_002092_100 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_016734_090 Hb_016734_090 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_000156_160--Hb_011918_050 Hb_008103_080 Hb_008103_080 Hb_000859_050--Hb_008103_080 Hb_005333_160 Hb_005333_160 Hb_000859_050--Hb_005333_160 Hb_001511_170 Hb_001511_170 Hb_000859_050--Hb_001511_170 Hb_003739_030 Hb_003739_030 Hb_000859_050--Hb_003739_030 Hb_000859_050--Hb_000922_140 Hb_171900_070 Hb_171900_070 Hb_000859_050--Hb_171900_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3331 6.45068 14.1628 5.17991 10.6432 13.004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72559 0.878107 1.37861 6.48039 9.29089

CAGE analysis