Hb_002081_120

Information

Type -
Description -
Location Contig2081: 214653-222274
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08960g
description POPTRDRAFT_202135; magnesium transporter CorA-like family protein
nr
ID XP_012093151.1
description PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
swissprot
ID Q9LJN2
description Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=2 SV=1
trembl
ID A0A067LBA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16356 PE=4 SV=1
Gene Ontology
ID GO:0015095
description magnesium transporter mrs2-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21559: 218877-222294 , PASA_asmbl_21560: 219470-219709 , PASA_asmbl_21561: 221255-221498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_120 0.0 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
2 Hb_000046_070 0.0660832571 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_003470_030 0.0688684943 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
4 Hb_002666_080 0.0751871651 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001489_100 0.0796434233 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
6 Hb_001033_050 0.0880456051 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
7 Hb_002477_250 0.0883867169 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
8 Hb_000958_150 0.0886225752 - - Actin, putative [Ricinus communis]
9 Hb_001147_110 0.0898114211 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
10 Hb_009780_100 0.089890932 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_000780_170 0.0906466232 - - PREDICTED: OBERON-like protein [Jatropha curcas]
12 Hb_000059_200 0.0907434914 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
13 Hb_056987_010 0.0913250814 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
14 Hb_011920_020 0.0916325582 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
15 Hb_000264_080 0.0924244114 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
16 Hb_001674_040 0.0934247728 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
17 Hb_147505_010 0.094431477 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
18 Hb_000926_010 0.0951325217 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
19 Hb_004631_190 0.0952338332 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_001638_300 0.0956665834 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_120 Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_002081_120--Hb_000046_070 Hb_003470_030 Hb_003470_030 Hb_002081_120--Hb_003470_030 Hb_002666_080 Hb_002666_080 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250 Hb_001147_110 Hb_001147_110 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_000046_070--Hb_001033_050 Hb_004668_060 Hb_004668_060 Hb_000046_070--Hb_004668_060 Hb_000780_170 Hb_000780_170 Hb_000046_070--Hb_000780_170 Hb_003470_030--Hb_002477_250 Hb_000926_010 Hb_000926_010 Hb_003470_030--Hb_000926_010 Hb_000264_070 Hb_000264_070 Hb_003470_030--Hb_000264_070 Hb_002903_140 Hb_002903_140 Hb_003470_030--Hb_002903_140 Hb_096819_010 Hb_096819_010 Hb_003470_030--Hb_096819_010 Hb_002890_100 Hb_002890_100 Hb_002666_080--Hb_002890_100 Hb_000264_080 Hb_000264_080 Hb_002666_080--Hb_000264_080 Hb_056987_010 Hb_056987_010 Hb_002666_080--Hb_056987_010 Hb_118840_050 Hb_118840_050 Hb_002666_080--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_002666_080--Hb_000336_110 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_002477_250--Hb_000264_070 Hb_002477_250--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5297 38.3521 23.9551 27.7744 23.2391 25.2827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.70697 6.99247 9.57792 17.9824 13.8579

CAGE analysis