Hb_002666_080

Information

Type -
Description -
Location Contig2666: 72685-85327
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27821: 74933-77491 , PASA_asmbl_27822: 81175-85382 , PASA_asmbl_27823: 81286-85382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002666_080 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002081_120 0.0751871651 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
3 Hb_002890_100 0.0821632962 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
4 Hb_000264_080 0.0832506077 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
5 Hb_056987_010 0.0946537118 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
6 Hb_118840_050 0.095347592 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
7 Hb_000336_110 0.0963246222 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_000162_280 0.1007190674 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
9 Hb_009780_100 0.1015676291 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_000034_160 0.102355274 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
11 Hb_000926_010 0.1025688633 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
12 Hb_005333_030 0.1030091283 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
13 Hb_001033_050 0.1056185453 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
14 Hb_002325_040 0.1074609762 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
15 Hb_001489_100 0.1084399202 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
16 Hb_004631_190 0.1084672842 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
17 Hb_000625_120 0.1085214539 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_009112_010 0.1086843075 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_003470_030 0.1101558601 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
20 Hb_000958_150 0.1103335783 - - Actin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002666_080 Hb_002666_080 Hb_002081_120 Hb_002081_120 Hb_002666_080--Hb_002081_120 Hb_002890_100 Hb_002890_100 Hb_002666_080--Hb_002890_100 Hb_000264_080 Hb_000264_080 Hb_002666_080--Hb_000264_080 Hb_056987_010 Hb_056987_010 Hb_002666_080--Hb_056987_010 Hb_118840_050 Hb_118840_050 Hb_002666_080--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_002666_080--Hb_000336_110 Hb_000046_070 Hb_000046_070 Hb_002081_120--Hb_000046_070 Hb_003470_030 Hb_003470_030 Hb_002081_120--Hb_003470_030 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250 Hb_002890_100--Hb_118840_050 Hb_000184_150 Hb_000184_150 Hb_002890_100--Hb_000184_150 Hb_029695_020 Hb_029695_020 Hb_002890_100--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_000264_080--Hb_000336_110 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_056987_010--Hb_000958_150 Hb_056987_010--Hb_000264_080 Hb_002284_170 Hb_002284_170 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_073171_090 Hb_073171_090 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_118840_050--Hb_001047_200 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0278 46.9952 28.1076 28.1989 31.048 27.6957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0241 7.82545 13.4028 25.0457 7.88211

CAGE analysis