Hb_005155_020

Information

Type -
Description -
Location Contig5155: 28449-29193
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016021
description amino acid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005155_020 0.0 - - -
2 Hb_000169_190 0.1476753943 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
3 Hb_036693_010 0.1710394853 - - -
4 Hb_005517_010 0.1909463071 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
5 Hb_000099_090 0.1926965507 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
6 Hb_004570_050 0.1974276884 - - kinase, putative [Ricinus communis]
7 Hb_012184_050 0.2023109705 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
8 Hb_000003_150 0.2045588734 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
9 Hb_001916_060 0.2083717362 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
10 Hb_170532_010 0.2126615345 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
11 Hb_006230_040 0.2138629609 - - kinase, putative [Ricinus communis]
12 Hb_000160_150 0.2146608376 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
13 Hb_027472_210 0.215987669 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
14 Hb_000258_320 0.217885465 - - -
15 Hb_124961_010 0.2208999259 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
16 Hb_012107_070 0.2229475415 - - -
17 Hb_005535_060 0.2235502879 - - -
18 Hb_080147_080 0.2235948324 - - peroxiredoxin, putative [Ricinus communis]
19 Hb_000045_320 0.2256417176 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_027402_090 0.2276290404 - - endonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_005155_020 Hb_005155_020 Hb_000169_190 Hb_000169_190 Hb_005155_020--Hb_000169_190 Hb_036693_010 Hb_036693_010 Hb_005155_020--Hb_036693_010 Hb_005517_010 Hb_005517_010 Hb_005155_020--Hb_005517_010 Hb_000099_090 Hb_000099_090 Hb_005155_020--Hb_000099_090 Hb_004570_050 Hb_004570_050 Hb_005155_020--Hb_004570_050 Hb_012184_050 Hb_012184_050 Hb_005155_020--Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_036693_010--Hb_005517_010 Hb_036693_010--Hb_000169_190 Hb_012107_070 Hb_012107_070 Hb_036693_010--Hb_012107_070 Hb_036693_010--Hb_000099_090 Hb_036693_010--Hb_012184_050 Hb_005517_010--Hb_012107_070 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_061466_020 Hb_061466_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_016006_010 Hb_016006_010 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000099_090--Hb_000169_190 Hb_000890_010 Hb_000890_010 Hb_000099_090--Hb_000890_010 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5813 12.4172 16.0391 3.74915 12.331 10.6877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34174 1.24426 0 0.585411 0

CAGE analysis