Hb_012107_070

Information

Type -
Description -
Location Contig12107: 63391-66839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012107_070 0.0 - - -
2 Hb_005517_010 0.1564526474 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
3 Hb_036693_010 0.2015084756 - - -
4 Hb_028848_030 0.2104567583 - - -
5 Hb_005155_020 0.2229475415 - - -
6 Hb_061466_020 0.2316780892 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_000214_090 0.2330533078 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
8 Hb_040779_010 0.2370719206 - - -
9 Hb_006230_040 0.2385089165 - - kinase, putative [Ricinus communis]
10 Hb_005535_060 0.2516086177 - - -
11 Hb_000146_060 0.2535942453 - - -
12 Hb_001916_060 0.2576818385 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
13 Hb_010447_020 0.2580675972 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
14 Hb_055339_010 0.2656342649 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
15 Hb_167508_010 0.2662129522 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
16 Hb_033926_010 0.2714080953 - - -
17 Hb_007926_010 0.2756832858 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
18 Hb_001214_170 0.2806285634 - - pyruvate kinase family protein [Medicago truncatula]
19 Hb_000997_010 0.2821884727 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
20 Hb_003772_020 0.2870892585 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]

Gene co-expression network

sample Hb_012107_070 Hb_012107_070 Hb_005517_010 Hb_005517_010 Hb_012107_070--Hb_005517_010 Hb_036693_010 Hb_036693_010 Hb_012107_070--Hb_036693_010 Hb_028848_030 Hb_028848_030 Hb_012107_070--Hb_028848_030 Hb_005155_020 Hb_005155_020 Hb_012107_070--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_012107_070--Hb_061466_020 Hb_000214_090 Hb_000214_090 Hb_012107_070--Hb_000214_090 Hb_005517_010--Hb_036693_010 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_005517_010--Hb_005155_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_036693_010--Hb_005155_020 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_040779_010 Hb_040779_010 Hb_028848_030--Hb_040779_010 Hb_059436_010 Hb_059436_010 Hb_028848_030--Hb_059436_010 Hb_006230_040 Hb_006230_040 Hb_028848_030--Hb_006230_040 Hb_028848_030--Hb_000214_090 Hb_028848_030--Hb_005517_010 Hb_005155_020--Hb_000169_190 Hb_005155_020--Hb_000099_090 Hb_004570_050 Hb_004570_050 Hb_005155_020--Hb_004570_050 Hb_005155_020--Hb_012184_050 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_167508_010 Hb_167508_010 Hb_061466_020--Hb_167508_010 Hb_129459_010 Hb_129459_010 Hb_061466_020--Hb_129459_010 Hb_000214_090--Hb_040779_010 Hb_000988_060 Hb_000988_060 Hb_000214_090--Hb_000988_060 Hb_005535_060 Hb_005535_060 Hb_000214_090--Hb_005535_060 Hb_004534_020 Hb_004534_020 Hb_000214_090--Hb_004534_020 Hb_000214_090--Hb_036693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.765386 0.61295 0.620706 0.0276296 0.5802 0.455942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis