Hb_040779_010

Information

Type -
Description -
Location Contig40779: 12799-13269
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040779_010 0.0 - - -
2 Hb_184629_010 0.1934586094 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000214_090 0.2108136906 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
4 Hb_000200_060 0.2128947799 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
5 Hb_028848_030 0.2337017961 - - -
6 Hb_000922_440 0.2349132528 - - -
7 Hb_012107_070 0.2370719206 - - -
8 Hb_034667_020 0.2447181531 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006960_030 0.2556246813 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
10 Hb_000836_050 0.2607415805 - - -
11 Hb_000028_630 0.2611830556 - - PIN-like protein, partial [Selaginella apoda]
12 Hb_001951_120 0.2665966935 - - -
13 Hb_005517_010 0.2713552554 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
14 Hb_059436_010 0.2714098534 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_000317_090 0.2814810048 - - hypothetical protein RCOM_1176360 [Ricinus communis]
16 Hb_000988_060 0.2816821094 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
17 Hb_002217_130 0.2861644141 - - galactinol synthase-1 [Manihot esculenta]
18 Hb_101020_010 0.2887126403 - - -
19 Hb_000007_310 0.2888787778 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
20 Hb_002234_220 0.2890551244 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_040779_010 Hb_040779_010 Hb_184629_010 Hb_184629_010 Hb_040779_010--Hb_184629_010 Hb_000214_090 Hb_000214_090 Hb_040779_010--Hb_000214_090 Hb_000200_060 Hb_000200_060 Hb_040779_010--Hb_000200_060 Hb_028848_030 Hb_028848_030 Hb_040779_010--Hb_028848_030 Hb_000922_440 Hb_000922_440 Hb_040779_010--Hb_000922_440 Hb_012107_070 Hb_012107_070 Hb_040779_010--Hb_012107_070 Hb_184629_010--Hb_000922_440 Hb_059436_010 Hb_059436_010 Hb_184629_010--Hb_059436_010 Hb_184629_010--Hb_000200_060 Hb_000219_070 Hb_000219_070 Hb_184629_010--Hb_000219_070 Hb_006960_030 Hb_006960_030 Hb_184629_010--Hb_006960_030 Hb_000214_090--Hb_012107_070 Hb_000988_060 Hb_000988_060 Hb_000214_090--Hb_000988_060 Hb_005535_060 Hb_005535_060 Hb_000214_090--Hb_005535_060 Hb_004534_020 Hb_004534_020 Hb_000214_090--Hb_004534_020 Hb_036693_010 Hb_036693_010 Hb_000214_090--Hb_036693_010 Hb_001741_100 Hb_001741_100 Hb_000200_060--Hb_001741_100 Hb_002234_220 Hb_002234_220 Hb_000200_060--Hb_002234_220 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_002124_020 Hb_002124_020 Hb_000200_060--Hb_002124_020 Hb_002217_130 Hb_002217_130 Hb_000200_060--Hb_002217_130 Hb_000007_310 Hb_000007_310 Hb_000200_060--Hb_000007_310 Hb_028848_030--Hb_012107_070 Hb_028848_030--Hb_059436_010 Hb_006230_040 Hb_006230_040 Hb_028848_030--Hb_006230_040 Hb_028848_030--Hb_000214_090 Hb_005517_010 Hb_005517_010 Hb_028848_030--Hb_005517_010 Hb_000922_440--Hb_000219_070 Hb_000922_440--Hb_059436_010 Hb_000002_320 Hb_000002_320 Hb_000922_440--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_000922_440--Hb_034667_020 Hb_012107_070--Hb_005517_010 Hb_012107_070--Hb_036693_010 Hb_005155_020 Hb_005155_020 Hb_012107_070--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_012107_070--Hb_061466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.295883 0.0597269 0.107097 0 0.19482 0.249205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis