Hb_000002_320

Information

Type -
Description -
Location Contig2: 482127-482394
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16500g
description hypothetical protein
nr
ID XP_012069797.1
description PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L727
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_320 0.0 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
2 Hb_063716_060 0.2128147945 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001023_020 0.2327038842 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
4 Hb_010222_010 0.2357267703 - - -
5 Hb_003556_020 0.2358697011 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
6 Hb_000188_090 0.236051496 - - JHL22C18.10 [Jatropha curcas]
7 Hb_002463_080 0.2362092373 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000934_220 0.2367212611 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
9 Hb_000574_020 0.2371902887 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_006275_030 0.237642407 - - -
11 Hb_001887_030 0.2400421444 - - -
12 Hb_044767_010 0.2406802575 - - -
13 Hb_066620_010 0.2413162643 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
14 Hb_012194_010 0.2419833401 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_012587_010 0.2431655364 - - -
16 Hb_003985_020 0.2441982312 - - -
17 Hb_003017_010 0.2449388471 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
18 Hb_002257_070 0.2452120701 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_005741_010 0.2452557118 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
20 Hb_056305_010 0.2453082563 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000002_320 Hb_000002_320 Hb_063716_060 Hb_063716_060 Hb_000002_320--Hb_063716_060 Hb_001023_020 Hb_001023_020 Hb_000002_320--Hb_001023_020 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080 Hb_002540_040 Hb_002540_040 Hb_063716_060--Hb_002540_040 Hb_000521_110 Hb_000521_110 Hb_063716_060--Hb_000521_110 Hb_000219_070 Hb_000219_070 Hb_063716_060--Hb_000219_070 Hb_011781_040 Hb_011781_040 Hb_063716_060--Hb_011781_040 Hb_000922_440 Hb_000922_440 Hb_063716_060--Hb_000922_440 Hb_057746_010 Hb_057746_010 Hb_001023_020--Hb_057746_010 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_114261_010 Hb_114261_010 Hb_001023_020--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_001023_020--Hb_000270_500 Hb_010222_010--Hb_000188_090 Hb_000934_220 Hb_000934_220 Hb_010222_010--Hb_000934_220 Hb_001887_030 Hb_001887_030 Hb_010222_010--Hb_001887_030 Hb_044767_010 Hb_044767_010 Hb_010222_010--Hb_044767_010 Hb_066620_010 Hb_066620_010 Hb_010222_010--Hb_066620_010 Hb_012587_010 Hb_012587_010 Hb_010222_010--Hb_012587_010 Hb_003556_020--Hb_002463_080 Hb_000574_020 Hb_000574_020 Hb_003556_020--Hb_000574_020 Hb_006275_030 Hb_006275_030 Hb_003556_020--Hb_006275_030 Hb_012194_010 Hb_012194_010 Hb_003556_020--Hb_012194_010 Hb_003556_020--Hb_010222_010 Hb_005741_010 Hb_005741_010 Hb_003556_020--Hb_005741_010 Hb_000188_090--Hb_000934_220 Hb_000188_090--Hb_001887_030 Hb_000188_090--Hb_044767_010 Hb_000188_090--Hb_066620_010 Hb_000188_090--Hb_012587_010 Hb_002463_080--Hb_000574_020 Hb_002463_080--Hb_006275_030 Hb_002463_080--Hb_012194_010 Hb_002463_080--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_002463_080--Hb_004458_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
243.112 0 48.3466 0 7.31089 300.847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.47125 6.27249

CAGE analysis