Hb_002540_040

Information

Type -
Description -
Location Contig2540: 51305-51595
Sequence    

Annotation

kegg
ID pda:103712051
description pentatricopeptide repeat-containing protein At1g59720, mitochondrial
nr
ID CDY23639.1
description BnaC05g39550D [Brassica napus]
swissprot
ID Q9LJ69
description Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
trembl
ID A0A078GEB1
description BnaC05g39550D protein OS=Brassica napus GN=BnaC05g39550D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_040 0.0 - - BnaC05g39550D [Brassica napus]
2 Hb_000252_230 0.1696916229 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
3 Hb_000809_150 0.1703106774 - - -
4 Hb_001105_060 0.1705719899 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
5 Hb_043999_010 0.1806868379 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_007765_090 0.1813341011 - - unknown [Glycine max]
7 Hb_131621_010 0.1912914213 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
8 Hb_001486_110 0.2174542437 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
9 Hb_001762_070 0.2190790373 - - -
10 Hb_063716_060 0.2379527442 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000493_020 0.2555456162 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
12 Hb_001032_030 0.2657236088 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
13 Hb_004021_110 0.2699786036 - - -
14 Hb_001439_030 0.2766660782 - - -
15 Hb_001206_070 0.2850783483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_022593_060 0.2851005603 - - -
17 Hb_010024_010 0.2860547383 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_032419_020 0.2954437653 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
19 Hb_001385_050 0.3010878025 - - catalytic, putative [Ricinus communis]
20 Hb_001241_060 0.30119202 - - -

Gene co-expression network

sample Hb_002540_040 Hb_002540_040 Hb_000252_230 Hb_000252_230 Hb_002540_040--Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_002540_040--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_002540_040--Hb_001105_060 Hb_043999_010 Hb_043999_010 Hb_002540_040--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_002540_040--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_002540_040--Hb_131621_010 Hb_000252_230--Hb_000809_150 Hb_000252_230--Hb_001105_060 Hb_000252_230--Hb_043999_010 Hb_000252_230--Hb_007765_090 Hb_000252_230--Hb_131621_010 Hb_001486_110 Hb_001486_110 Hb_000252_230--Hb_001486_110 Hb_000809_150--Hb_001105_060 Hb_000809_150--Hb_043999_010 Hb_000809_150--Hb_007765_090 Hb_000809_150--Hb_131621_010 Hb_000809_150--Hb_001486_110 Hb_001105_060--Hb_043999_010 Hb_001105_060--Hb_007765_090 Hb_001105_060--Hb_131621_010 Hb_001105_060--Hb_001486_110 Hb_043999_010--Hb_007765_090 Hb_043999_010--Hb_131621_010 Hb_043999_010--Hb_001486_110 Hb_007765_090--Hb_131621_010 Hb_007765_090--Hb_001486_110 Hb_131621_010--Hb_001486_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.170983 0 0.46446 0 0 2.40492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis