Hb_043999_010

Information

Type -
Description -
Location Contig43999: 84-1508
Sequence    

Annotation

kegg
ID gmx:102670328
description uncharacterized LOC102670328
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID GO:0004190
description ty3 gypsy retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043999_010 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_007765_090 0.0018740469 - - unknown [Glycine max]
3 Hb_131621_010 0.0265451702 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
4 Hb_001105_060 0.043774621 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
5 Hb_000809_150 0.0462127203 - - -
6 Hb_000252_230 0.0733098303 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
7 Hb_001486_110 0.0751469377 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
8 Hb_004021_110 0.1510106615 - - -
9 Hb_002540_040 0.1806868379 - - BnaC05g39550D [Brassica napus]
10 Hb_000705_310 0.2157533411 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
11 Hb_001631_120 0.2167472952 - - unnamed protein product [Vitis vinifera]
12 Hb_000105_090 0.2179757541 - - -
13 Hb_002805_080 0.2197022154 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
14 Hb_003384_050 0.2254905976 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000089_230 0.2265547413 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_000290_010 0.2412409523 - - -
17 Hb_002307_060 0.2441466901 - - -
18 Hb_011781_050 0.2571518677 - - -
19 Hb_001032_040 0.2691009906 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_057486_010 0.2873745822 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]

Gene co-expression network

sample Hb_043999_010 Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_043999_010--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_043999_010--Hb_131621_010 Hb_001105_060 Hb_001105_060 Hb_043999_010--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_043999_010--Hb_000809_150 Hb_000252_230 Hb_000252_230 Hb_043999_010--Hb_000252_230 Hb_001486_110 Hb_001486_110 Hb_043999_010--Hb_001486_110 Hb_007765_090--Hb_131621_010 Hb_007765_090--Hb_001105_060 Hb_007765_090--Hb_000809_150 Hb_007765_090--Hb_001486_110 Hb_007765_090--Hb_000252_230 Hb_131621_010--Hb_001486_110 Hb_131621_010--Hb_001105_060 Hb_131621_010--Hb_000809_150 Hb_131621_010--Hb_000252_230 Hb_001105_060--Hb_000809_150 Hb_001105_060--Hb_000252_230 Hb_001105_060--Hb_001486_110 Hb_000809_150--Hb_000252_230 Hb_000809_150--Hb_001486_110 Hb_000252_230--Hb_001486_110 Hb_004021_110 Hb_004021_110 Hb_001486_110--Hb_004021_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0165296 0 0 0.0583252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis