Hb_001105_060

Information

Type -
Description -
Location Contig1105: 27353-30061
Sequence    

Annotation

kegg
ID cic:CICLE_v10020349mg
description hypothetical protein
nr
ID KDO86700.1
description hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067H722
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0045352mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_060 0.0 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
2 Hb_000809_150 0.0024418991 - - -
3 Hb_000252_230 0.0296119518 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
4 Hb_043999_010 0.043774621 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_007765_090 0.045646018 - - unknown [Glycine max]
6 Hb_131621_010 0.0702643482 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
7 Hb_001486_110 0.1186764043 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
8 Hb_002540_040 0.1705719899 - - BnaC05g39550D [Brassica napus]
9 Hb_004021_110 0.194066134 - - -
10 Hb_000705_310 0.2582760512 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
11 Hb_001631_120 0.2592610701 - - unnamed protein product [Vitis vinifera]
12 Hb_000105_090 0.2604784564 - - -
13 Hb_002805_080 0.2621893022 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
14 Hb_032419_020 0.2625926548 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
15 Hb_003384_050 0.2679248706 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000089_230 0.2689792287 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
17 Hb_057486_010 0.2722104259 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
18 Hb_000290_010 0.2835280181 - - -
19 Hb_002307_060 0.2864060516 - - -
20 Hb_001439_030 0.2972769179 - - -

Gene co-expression network

sample Hb_001105_060 Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_001105_060--Hb_000809_150 Hb_000252_230 Hb_000252_230 Hb_001105_060--Hb_000252_230 Hb_043999_010 Hb_043999_010 Hb_001105_060--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_001105_060--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_001105_060--Hb_131621_010 Hb_001486_110 Hb_001486_110 Hb_001105_060--Hb_001486_110 Hb_000809_150--Hb_000252_230 Hb_000809_150--Hb_043999_010 Hb_000809_150--Hb_007765_090 Hb_000809_150--Hb_131621_010 Hb_000809_150--Hb_001486_110 Hb_000252_230--Hb_043999_010 Hb_000252_230--Hb_007765_090 Hb_000252_230--Hb_131621_010 Hb_000252_230--Hb_001486_110 Hb_043999_010--Hb_007765_090 Hb_043999_010--Hb_131621_010 Hb_043999_010--Hb_001486_110 Hb_007765_090--Hb_131621_010 Hb_007765_090--Hb_001486_110 Hb_131621_010--Hb_001486_110 Hb_004021_110 Hb_004021_110 Hb_001486_110--Hb_004021_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0236 0 0 0.107801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis