Hb_004021_110

Information

Type -
Description -
Location Contig4021: 94282-94799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004021_110 0.0 - - -
2 Hb_000705_310 0.0656279272 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
3 Hb_001631_120 0.0666388412 - - unnamed protein product [Vitis vinifera]
4 Hb_000105_090 0.0678883958 - - -
5 Hb_002805_080 0.0696447554 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
6 Hb_003384_050 0.075535505 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001486_110 0.0762795736 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
8 Hb_000089_230 0.0766188227 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
9 Hb_000290_010 0.0915807772 - - -
10 Hb_002307_060 0.0945435076 - - -
11 Hb_011781_050 0.1078134916 - - -
12 Hb_131621_010 0.1247205773 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
13 Hb_003494_250 0.1475719996 - - -
14 Hb_007765_090 0.1491588548 - - unknown [Glycine max]
15 Hb_043999_010 0.1510106615 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_001032_040 0.1813082884 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
17 Hb_001217_030 0.1894294978 - - -
18 Hb_005357_190 0.1902817756 - - Protein COBRA precursor, putative [Ricinus communis]
19 Hb_001105_060 0.194066134 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
20 Hb_000809_150 0.1964522238 - - -

Gene co-expression network

sample Hb_004021_110 Hb_004021_110 Hb_000705_310 Hb_000705_310 Hb_004021_110--Hb_000705_310 Hb_001631_120 Hb_001631_120 Hb_004021_110--Hb_001631_120 Hb_000105_090 Hb_000105_090 Hb_004021_110--Hb_000105_090 Hb_002805_080 Hb_002805_080 Hb_004021_110--Hb_002805_080 Hb_003384_050 Hb_003384_050 Hb_004021_110--Hb_003384_050 Hb_001486_110 Hb_001486_110 Hb_004021_110--Hb_001486_110 Hb_000705_310--Hb_001631_120 Hb_000705_310--Hb_000105_090 Hb_000705_310--Hb_002805_080 Hb_000705_310--Hb_003384_050 Hb_000089_230 Hb_000089_230 Hb_000705_310--Hb_000089_230 Hb_000290_010 Hb_000290_010 Hb_000705_310--Hb_000290_010 Hb_001631_120--Hb_000105_090 Hb_001631_120--Hb_002805_080 Hb_001631_120--Hb_003384_050 Hb_001631_120--Hb_000089_230 Hb_001631_120--Hb_000290_010 Hb_000105_090--Hb_002805_080 Hb_000105_090--Hb_003384_050 Hb_000105_090--Hb_000089_230 Hb_000105_090--Hb_000290_010 Hb_002805_080--Hb_003384_050 Hb_002805_080--Hb_000089_230 Hb_002805_080--Hb_000290_010 Hb_003384_050--Hb_000089_230 Hb_003384_050--Hb_000290_010 Hb_131621_010 Hb_131621_010 Hb_001486_110--Hb_131621_010 Hb_007765_090 Hb_007765_090 Hb_001486_110--Hb_007765_090 Hb_043999_010 Hb_043999_010 Hb_001486_110--Hb_043999_010 Hb_001105_060 Hb_001105_060 Hb_001486_110--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_001486_110--Hb_000809_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.94497 0 0 1.52011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis