Hb_000521_110

Information

Type -
Description -
Location Contig521: 67178-67657
Sequence    

Annotation

kegg
ID rcu:RCOM_1775080
description hypothetical protein
nr
ID XP_002512189.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2P8
description VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1
trembl
ID B9REM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_063716_060 0.2592097559 - - conserved hypothetical protein [Ricinus communis]
3 Hb_165078_010 0.3016845059 - - -
4 Hb_000025_060 0.3101093809 - - unknown [Populus trichocarpa]
5 Hb_000002_320 0.3190184489 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
6 Hb_003666_010 0.3566330322 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
7 Hb_000493_020 0.3572831962 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_011781_040 0.3620278727 - - -
9 Hb_000219_070 0.364503688 - - -
10 Hb_002805_140 0.367340742 - - hypothetical protein POPTR_0001s28390g [Populus trichocarpa]
11 Hb_000922_440 0.3679544569 - - -
12 Hb_039635_010 0.3683920208 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_002540_040 0.3721605325 - - BnaC05g39550D [Brassica napus]
14 Hb_072775_010 0.3724479801 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
15 Hb_002307_070 0.3730940587 - - hypothetical protein JCGZ_14841 [Jatropha curcas]
16 Hb_007904_190 0.3736141395 - - -
17 Hb_001023_020 0.3793949314 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
18 Hb_057746_010 0.3801795599 - - -
19 Hb_007044_150 0.3879228822 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
20 Hb_007508_040 0.3886091747 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000521_110 Hb_000521_110 Hb_063716_060 Hb_063716_060 Hb_000521_110--Hb_063716_060 Hb_165078_010 Hb_165078_010 Hb_000521_110--Hb_165078_010 Hb_000025_060 Hb_000025_060 Hb_000521_110--Hb_000025_060 Hb_000002_320 Hb_000002_320 Hb_000521_110--Hb_000002_320 Hb_003666_010 Hb_003666_010 Hb_000521_110--Hb_003666_010 Hb_000493_020 Hb_000493_020 Hb_000521_110--Hb_000493_020 Hb_063716_060--Hb_000002_320 Hb_002540_040 Hb_002540_040 Hb_063716_060--Hb_002540_040 Hb_000219_070 Hb_000219_070 Hb_063716_060--Hb_000219_070 Hb_011781_040 Hb_011781_040 Hb_063716_060--Hb_011781_040 Hb_000922_440 Hb_000922_440 Hb_063716_060--Hb_000922_440 Hb_057746_010 Hb_057746_010 Hb_165078_010--Hb_057746_010 Hb_105484_010 Hb_105484_010 Hb_165078_010--Hb_105484_010 Hb_050286_020 Hb_050286_020 Hb_165078_010--Hb_050286_020 Hb_000831_040 Hb_000831_040 Hb_165078_010--Hb_000831_040 Hb_098842_010 Hb_098842_010 Hb_165078_010--Hb_098842_010 Hb_004317_050 Hb_004317_050 Hb_165078_010--Hb_004317_050 Hb_007508_040 Hb_007508_040 Hb_000025_060--Hb_007508_040 Hb_156526_010 Hb_156526_010 Hb_000025_060--Hb_156526_010 Hb_126112_010 Hb_126112_010 Hb_000025_060--Hb_126112_010 Hb_002045_140 Hb_002045_140 Hb_000025_060--Hb_002045_140 Hb_021888_110 Hb_021888_110 Hb_000025_060--Hb_021888_110 Hb_000523_100 Hb_000523_100 Hb_000025_060--Hb_000523_100 Hb_001023_020 Hb_001023_020 Hb_000002_320--Hb_001023_020 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080 Hb_003297_020 Hb_003297_020 Hb_003666_010--Hb_003297_020 Hb_176117_010 Hb_176117_010 Hb_003666_010--Hb_176117_010 Hb_007136_020 Hb_007136_020 Hb_003666_010--Hb_007136_020 Hb_004241_040 Hb_004241_040 Hb_003666_010--Hb_004241_040 Hb_000140_490 Hb_000140_490 Hb_003666_010--Hb_000140_490 Hb_003849_080 Hb_003849_080 Hb_003666_010--Hb_003849_080 Hb_001439_030 Hb_001439_030 Hb_000493_020--Hb_001439_030 Hb_000493_020--Hb_002540_040 Hb_000493_020--Hb_000219_070 Hb_131621_010 Hb_131621_010 Hb_000493_020--Hb_131621_010 Hb_007765_090 Hb_007765_090 Hb_000493_020--Hb_007765_090 Hb_043999_010 Hb_043999_010 Hb_000493_020--Hb_043999_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218465 0 0.151587 0 0 0.420085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.112838 0 0 0

CAGE analysis