Hb_063716_060

Information

Type -
Description -
Location Contig63716: 59604-61111
Sequence    

Annotation

kegg
ID rcu:RCOM_0899390
description hypothetical protein
nr
ID XP_002517622.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LBH4
description SPX domain-containing protein 1 OS=Arabidopsis thaliana GN=SPX1 PE=2 SV=2
trembl
ID B9RV53
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0899390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000002_320 0.2128147945 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
3 Hb_002540_040 0.2379527442 - - BnaC05g39550D [Brassica napus]
4 Hb_000521_110 0.2592097559 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000219_070 0.2681528674 - - -
6 Hb_011781_040 0.2791279155 - - -
7 Hb_000922_440 0.2987037178 - - -
8 Hb_001032_030 0.3001210536 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
9 Hb_000195_050 0.3126283883 - - -
10 Hb_038675_010 0.3134839129 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
11 Hb_059069_010 0.3135728609 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
12 Hb_057746_010 0.3146362933 - - -
13 Hb_011360_100 0.3153191806 - - -
14 Hb_000563_290 0.3154734787 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
15 Hb_004458_050 0.3173793077 - - -
16 Hb_005741_010 0.3181997331 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
17 Hb_012194_010 0.3206704457 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_165078_010 0.322538316 - - -
19 Hb_000792_080 0.3228741493 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
20 Hb_000493_020 0.3239897439 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_063716_060 Hb_063716_060 Hb_000002_320 Hb_000002_320 Hb_063716_060--Hb_000002_320 Hb_002540_040 Hb_002540_040 Hb_063716_060--Hb_002540_040 Hb_000521_110 Hb_000521_110 Hb_063716_060--Hb_000521_110 Hb_000219_070 Hb_000219_070 Hb_063716_060--Hb_000219_070 Hb_011781_040 Hb_011781_040 Hb_063716_060--Hb_011781_040 Hb_000922_440 Hb_000922_440 Hb_063716_060--Hb_000922_440 Hb_001023_020 Hb_001023_020 Hb_000002_320--Hb_001023_020 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080 Hb_000252_230 Hb_000252_230 Hb_002540_040--Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_002540_040--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_002540_040--Hb_001105_060 Hb_043999_010 Hb_043999_010 Hb_002540_040--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_002540_040--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_002540_040--Hb_131621_010 Hb_165078_010 Hb_165078_010 Hb_000521_110--Hb_165078_010 Hb_000025_060 Hb_000025_060 Hb_000521_110--Hb_000025_060 Hb_000521_110--Hb_000002_320 Hb_003666_010 Hb_003666_010 Hb_000521_110--Hb_003666_010 Hb_000493_020 Hb_000493_020 Hb_000521_110--Hb_000493_020 Hb_000219_070--Hb_000922_440 Hb_184629_010 Hb_184629_010 Hb_000219_070--Hb_184629_010 Hb_000219_070--Hb_000493_020 Hb_040779_010 Hb_040779_010 Hb_000219_070--Hb_040779_010 Hb_006960_030 Hb_006960_030 Hb_000219_070--Hb_006960_030 Hb_000792_080 Hb_000792_080 Hb_011781_040--Hb_000792_080 Hb_001032_030 Hb_001032_030 Hb_011781_040--Hb_001032_030 Hb_023051_010 Hb_023051_010 Hb_011781_040--Hb_023051_010 Hb_094437_010 Hb_094437_010 Hb_011781_040--Hb_094437_010 Hb_115045_010 Hb_115045_010 Hb_011781_040--Hb_115045_010 Hb_000922_440--Hb_184629_010 Hb_059436_010 Hb_059436_010 Hb_000922_440--Hb_059436_010 Hb_000922_440--Hb_040779_010 Hb_000922_440--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_000922_440--Hb_034667_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0454659 0 0.0346652 0 0 0.110287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis