Hb_000493_020

Information

Type -
Description -
Location Contig493: 48318-48624
Sequence    

Annotation

kegg
ID rcu:RCOM_0249270
description Coiled-coil domain-containing protein, putative
nr
ID XP_002529167.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9ST48
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_0249270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45360: 48537-49320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000493_020 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_001439_030 0.2401182683 - - -
3 Hb_002540_040 0.2555456162 - - BnaC05g39550D [Brassica napus]
4 Hb_000219_070 0.266529559 - - -
5 Hb_131621_010 0.2970248181 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
6 Hb_007765_090 0.2973515436 - - unknown [Glycine max]
7 Hb_043999_010 0.2974525131 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_001486_110 0.3017945069 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
9 Hb_001105_060 0.3028272326 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
10 Hb_000809_150 0.303293619 - - -
11 Hb_056531_040 0.3081700669 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
12 Hb_000252_230 0.3096168631 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
13 Hb_134956_010 0.3177632751 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
14 Hb_004021_110 0.3226722397 - - -
15 Hb_063716_060 0.3239897439 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002249_110 0.3245516481 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
17 Hb_002352_040 0.3297975818 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
18 Hb_165078_010 0.3300073143 - - -
19 Hb_003297_020 0.3393140766 - - unknown [Populus trichocarpa x Populus deltoides]
20 Hb_096490_010 0.3396201305 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000493_020 Hb_000493_020 Hb_001439_030 Hb_001439_030 Hb_000493_020--Hb_001439_030 Hb_002540_040 Hb_002540_040 Hb_000493_020--Hb_002540_040 Hb_000219_070 Hb_000219_070 Hb_000493_020--Hb_000219_070 Hb_131621_010 Hb_131621_010 Hb_000493_020--Hb_131621_010 Hb_007765_090 Hb_007765_090 Hb_000493_020--Hb_007765_090 Hb_043999_010 Hb_043999_010 Hb_000493_020--Hb_043999_010 Hb_001385_090 Hb_001385_090 Hb_001439_030--Hb_001385_090 Hb_130775_010 Hb_130775_010 Hb_001439_030--Hb_130775_010 Hb_001439_030--Hb_002540_040 Hb_005839_010 Hb_005839_010 Hb_001439_030--Hb_005839_010 Hb_111834_010 Hb_111834_010 Hb_001439_030--Hb_111834_010 Hb_000252_230 Hb_000252_230 Hb_002540_040--Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_002540_040--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_002540_040--Hb_001105_060 Hb_002540_040--Hb_043999_010 Hb_002540_040--Hb_007765_090 Hb_002540_040--Hb_131621_010 Hb_000922_440 Hb_000922_440 Hb_000219_070--Hb_000922_440 Hb_184629_010 Hb_184629_010 Hb_000219_070--Hb_184629_010 Hb_063716_060 Hb_063716_060 Hb_000219_070--Hb_063716_060 Hb_040779_010 Hb_040779_010 Hb_000219_070--Hb_040779_010 Hb_006960_030 Hb_006960_030 Hb_000219_070--Hb_006960_030 Hb_131621_010--Hb_007765_090 Hb_131621_010--Hb_043999_010 Hb_001486_110 Hb_001486_110 Hb_131621_010--Hb_001486_110 Hb_131621_010--Hb_001105_060 Hb_131621_010--Hb_000809_150 Hb_131621_010--Hb_000252_230 Hb_007765_090--Hb_043999_010 Hb_007765_090--Hb_001105_060 Hb_007765_090--Hb_000809_150 Hb_007765_090--Hb_001486_110 Hb_007765_090--Hb_000252_230 Hb_043999_010--Hb_001105_060 Hb_043999_010--Hb_000809_150 Hb_043999_010--Hb_000252_230 Hb_043999_010--Hb_001486_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26127 0 27.9156 0 7.8719 88.7958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36598 3.65408 0 0 0

CAGE analysis