Hb_001023_020

Information

Type -
Description -
Location Contig1023: 65013-65381
Sequence    

Annotation

kegg
ID pop:POPTR_1605s00200g
description hypothetical protein
nr
ID XP_006387178.1
description hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DVL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1605s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001023_020 0.0 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
2 Hb_057746_010 0.2325215878 - - -
3 Hb_000002_320 0.2327038842 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
4 Hb_034667_020 0.2425705238 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007827_020 0.2440021867 - - -
6 Hb_114261_010 0.2477530657 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
7 Hb_000270_500 0.2497113292 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
8 Hb_074701_010 0.2513436513 - - -
9 Hb_138652_020 0.2576035532 - - -
10 Hb_080530_020 0.2611299345 - - -
11 Hb_000193_150 0.2628595547 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
12 Hb_001138_010 0.2741815191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_070385_010 0.2752078303 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
14 Hb_004307_040 0.2853929692 - - -
15 Hb_004429_030 0.2873463949 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
16 Hb_002249_110 0.2879212343 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
17 Hb_094647_010 0.2908026158 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
18 Hb_171554_020 0.2921845803 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_000046_410 0.2937239606 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_165078_010 0.2977119562 - - -

Gene co-expression network

sample Hb_001023_020 Hb_001023_020 Hb_057746_010 Hb_057746_010 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_114261_010 Hb_114261_010 Hb_001023_020--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_001023_020--Hb_000270_500 Hb_004317_050 Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_063716_060 Hb_063716_060 Hb_000002_320--Hb_063716_060 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080 Hb_171619_010 Hb_171619_010 Hb_034667_020--Hb_171619_010 Hb_001277_410 Hb_001277_410 Hb_034667_020--Hb_001277_410 Hb_040779_010 Hb_040779_010 Hb_034667_020--Hb_040779_010 Hb_036693_010 Hb_036693_010 Hb_034667_020--Hb_036693_010 Hb_000160_150 Hb_000160_150 Hb_034667_020--Hb_000160_150 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_024272_010 Hb_024272_010 Hb_007827_020--Hb_024272_010 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040 Hb_007827_020--Hb_000270_500 Hb_003929_060 Hb_003929_060 Hb_114261_010--Hb_003929_060 Hb_000061_040 Hb_000061_040 Hb_114261_010--Hb_000061_040 Hb_000160_200 Hb_000160_200 Hb_114261_010--Hb_000160_200 Hb_001396_150 Hb_001396_150 Hb_114261_010--Hb_001396_150 Hb_114261_010--Hb_000270_500 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.1304 2.45724 11.0679 2.2881 10.3944 87.3093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03851 1.8718 0 10.103 2.11036

CAGE analysis