Hb_000160_200

Information

Type -
Description -
Location Contig160: 171323-172612
Sequence    

Annotation

kegg
ID rcu:RCOM_0140640
description chloroplast-targeted copper chaperone, putative
nr
ID XP_012089937.1
description PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02499 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_200 0.0 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
2 Hb_114261_010 0.2133273238 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
3 Hb_000270_500 0.2234886347 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
4 Hb_002243_040 0.236345134 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
5 Hb_000061_040 0.2397895826 - - PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
6 Hb_116681_010 0.2504339236 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
7 Hb_004032_080 0.2538401194 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
8 Hb_001195_390 0.25617444 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
9 Hb_080530_020 0.2617323337 - - -
10 Hb_000033_060 0.2621645091 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
11 Hb_000363_170 0.2652319477 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000466_060 0.2656545848 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_001946_280 0.2712506392 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001952_070 0.2714989106 - - 40S ribosomal protein S6B [Hevea brasiliensis]
15 Hb_005470_010 0.2715862184 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
16 Hb_015401_030 0.2719706874 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_000415_060 0.2728432722 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
18 Hb_130788_010 0.274346082 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
19 Hb_003929_060 0.2754220819 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
20 Hb_000117_020 0.2772932386 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_200 Hb_000160_200 Hb_114261_010 Hb_114261_010 Hb_000160_200--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_000160_200--Hb_000270_500 Hb_002243_040 Hb_002243_040 Hb_000160_200--Hb_002243_040 Hb_000061_040 Hb_000061_040 Hb_000160_200--Hb_000061_040 Hb_116681_010 Hb_116681_010 Hb_000160_200--Hb_116681_010 Hb_004032_080 Hb_004032_080 Hb_000160_200--Hb_004032_080 Hb_003929_060 Hb_003929_060 Hb_114261_010--Hb_003929_060 Hb_114261_010--Hb_000061_040 Hb_001023_020 Hb_001023_020 Hb_114261_010--Hb_001023_020 Hb_001396_150 Hb_001396_150 Hb_114261_010--Hb_001396_150 Hb_114261_010--Hb_000270_500 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_007827_020 Hb_007827_020 Hb_000270_500--Hb_007827_020 Hb_001195_390 Hb_001195_390 Hb_002243_040--Hb_001195_390 Hb_130788_010 Hb_130788_010 Hb_002243_040--Hb_130788_010 Hb_005470_010 Hb_005470_010 Hb_002243_040--Hb_005470_010 Hb_046440_010 Hb_046440_010 Hb_002243_040--Hb_046440_010 Hb_001946_280 Hb_001946_280 Hb_002243_040--Hb_001946_280 Hb_000061_040--Hb_003929_060 Hb_000828_040 Hb_000828_040 Hb_000061_040--Hb_000828_040 Hb_000861_030 Hb_000861_030 Hb_000061_040--Hb_000861_030 Hb_004883_060 Hb_004883_060 Hb_000061_040--Hb_004883_060 Hb_013925_010 Hb_013925_010 Hb_116681_010--Hb_013925_010 Hb_001425_120 Hb_001425_120 Hb_116681_010--Hb_001425_120 Hb_000035_130 Hb_000035_130 Hb_116681_010--Hb_000035_130 Hb_102465_010 Hb_102465_010 Hb_116681_010--Hb_102465_010 Hb_001095_060 Hb_001095_060 Hb_116681_010--Hb_001095_060 Hb_002843_160 Hb_002843_160 Hb_004032_080--Hb_002843_160 Hb_004884_060 Hb_004884_060 Hb_004032_080--Hb_004884_060 Hb_002989_080 Hb_002989_080 Hb_004032_080--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004032_080--Hb_007178_010 Hb_000907_100 Hb_000907_100 Hb_004032_080--Hb_000907_100 Hb_000571_070 Hb_000571_070 Hb_004032_080--Hb_000571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72536 0.365445 0 0.072423 0.584515 5.23912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470138 0.575172 1.05696 1.2068 0

CAGE analysis