Hb_002243_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2243: 73545-88641
Sequence    

Annotation

kegg
ID mdm:103412199
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID KDP42430.1
description hypothetical protein JCGZ_00227 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067LD54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00227 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23336: 83317-85008 , PASA_asmbl_23337: 86133-88409 , PASA_asmbl_23338: 86241-86984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002243_040 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
2 Hb_001195_390 0.1989946941 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
3 Hb_130788_010 0.2202770761 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
4 Hb_005470_010 0.2280654899 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
5 Hb_000160_200 0.236345134 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
6 Hb_046440_010 0.236468144 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
7 Hb_001946_280 0.2447077894 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013925_010 0.2512919645 - - RecName: Full=Pro-hevein; AltName: Full=Major hevein; Contains: RecName: Full=Hevein; AltName: Allergen=Hev b 6; Contains: RecName: Full=Win-like protein; Flags: Precursor [Hevea brasiliensis]
9 Hb_004032_080 0.2528007093 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
10 Hb_006198_050 0.2557477966 - - protein with unknown function [Ricinus communis]
11 Hb_005867_080 0.2627055022 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
12 Hb_010317_030 0.2633770013 - - unknown [Picea sitchensis]
13 Hb_000457_160 0.2635886141 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
14 Hb_002960_120 0.263758817 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
15 Hb_002843_160 0.2660947806 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
16 Hb_000117_020 0.2676552529 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_003106_010 0.2695129234 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
18 Hb_001425_120 0.2715263199 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
19 Hb_000035_120 0.2721568272 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
20 Hb_000270_420 0.2727495378 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002243_040 Hb_002243_040 Hb_001195_390 Hb_001195_390 Hb_002243_040--Hb_001195_390 Hb_130788_010 Hb_130788_010 Hb_002243_040--Hb_130788_010 Hb_005470_010 Hb_005470_010 Hb_002243_040--Hb_005470_010 Hb_000160_200 Hb_000160_200 Hb_002243_040--Hb_000160_200 Hb_046440_010 Hb_046440_010 Hb_002243_040--Hb_046440_010 Hb_001946_280 Hb_001946_280 Hb_002243_040--Hb_001946_280 Hb_013925_010 Hb_013925_010 Hb_001195_390--Hb_013925_010 Hb_006344_010 Hb_006344_010 Hb_001195_390--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_001195_390--Hb_140572_010 Hb_001195_390--Hb_046440_010 Hb_001195_390--Hb_000160_200 Hb_130788_010--Hb_013925_010 Hb_003752_050 Hb_003752_050 Hb_130788_010--Hb_003752_050 Hb_019654_080 Hb_019654_080 Hb_130788_010--Hb_019654_080 Hb_130788_010--Hb_005470_010 Hb_130788_010--Hb_000160_200 Hb_000895_040 Hb_000895_040 Hb_005470_010--Hb_000895_040 Hb_040506_010 Hb_040506_010 Hb_005470_010--Hb_040506_010 Hb_000033_060 Hb_000033_060 Hb_005470_010--Hb_000033_060 Hb_072912_010 Hb_072912_010 Hb_005470_010--Hb_072912_010 Hb_002960_120 Hb_002960_120 Hb_005470_010--Hb_002960_120 Hb_009193_130 Hb_009193_130 Hb_005470_010--Hb_009193_130 Hb_114261_010 Hb_114261_010 Hb_000160_200--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_000160_200--Hb_000270_500 Hb_000061_040 Hb_000061_040 Hb_000160_200--Hb_000061_040 Hb_116681_010 Hb_116681_010 Hb_000160_200--Hb_116681_010 Hb_004032_080 Hb_004032_080 Hb_000160_200--Hb_004032_080 Hb_000943_030 Hb_000943_030 Hb_046440_010--Hb_000943_030 Hb_000415_060 Hb_000415_060 Hb_046440_010--Hb_000415_060 Hb_005723_040 Hb_005723_040 Hb_046440_010--Hb_005723_040 Hb_000326_030 Hb_000326_030 Hb_046440_010--Hb_000326_030 Hb_000397_100 Hb_000397_100 Hb_046440_010--Hb_000397_100 Hb_011639_050 Hb_011639_050 Hb_001946_280--Hb_011639_050 Hb_000369_060 Hb_000369_060 Hb_001946_280--Hb_000369_060 Hb_002740_130 Hb_002740_130 Hb_001946_280--Hb_002740_130 Hb_008453_150 Hb_008453_150 Hb_001946_280--Hb_008453_150 Hb_003060_070 Hb_003060_070 Hb_001946_280--Hb_003060_070 Hb_185467_010 Hb_185467_010 Hb_001946_280--Hb_185467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.582187 0.0450479 0.0106638 0.00950939 0.103744 0.640146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0465385 0.0244145 0.46652 0.0484357 0

CAGE analysis