Hb_000415_060

Information

Type -
Description -
Location Contig415: 127485-132493
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14920g
description POPTRDRAFT_664708; hypothetical protein
nr
ID XP_012066242.1
description PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
swissprot
ID Q9C1W5
description Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1
trembl
ID A0A067LED2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41092: 127434-133492
cDNA
(Sanger)
(ID:Location)		 037_L22.ab1: 127477-133493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000415_060 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
2 Hb_000028_160 0.16807568 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
3 Hb_152079_010 0.1718582238 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
4 Hb_000347_500 0.1767107416 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
5 Hb_011030_010 0.1817113385 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
6 Hb_046931_010 0.1828466877 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
7 Hb_021420_010 0.187922881 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
8 Hb_006649_080 0.1882537505 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
9 Hb_000365_260 0.1885025839 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000326_030 0.1908989659 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
11 Hb_001575_040 0.1937011051 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
12 Hb_007810_100 0.195214708 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
13 Hb_000359_250 0.198388455 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
14 Hb_009404_010 0.1986177536 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
15 Hb_002157_190 0.1992569184 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
16 Hb_001606_080 0.2019711911 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
17 Hb_000179_200 0.2024316903 - - unnamed protein product [Vitis vinifera]
18 Hb_000939_010 0.2030515633 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
19 Hb_001946_280 0.2032800211 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006921_030 0.2034207122 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]

Gene co-expression network

sample Hb_000415_060 Hb_000415_060 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_000347_500 Hb_000347_500 Hb_000415_060--Hb_000347_500 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_021420_010 Hb_021420_010 Hb_000415_060--Hb_021420_010 Hb_000815_140 Hb_000815_140 Hb_000028_160--Hb_000815_140 Hb_010128_070 Hb_010128_070 Hb_000028_160--Hb_010128_070 Hb_000742_210 Hb_000742_210 Hb_000028_160--Hb_000742_210 Hb_009620_030 Hb_009620_030 Hb_000028_160--Hb_009620_030 Hb_000028_160--Hb_046931_010 Hb_003064_030 Hb_003064_030 Hb_000028_160--Hb_003064_030 Hb_002893_150 Hb_002893_150 Hb_152079_010--Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_152079_010--Hb_000531_090 Hb_010423_020 Hb_010423_020 Hb_152079_010--Hb_010423_020 Hb_001575_040 Hb_001575_040 Hb_152079_010--Hb_001575_040 Hb_000789_080 Hb_000789_080 Hb_152079_010--Hb_000789_080 Hb_000915_050 Hb_000915_050 Hb_152079_010--Hb_000915_050 Hb_000326_030 Hb_000326_030 Hb_000347_500--Hb_000326_030 Hb_006698_050 Hb_006698_050 Hb_000347_500--Hb_006698_050 Hb_000939_010 Hb_000939_010 Hb_000347_500--Hb_000939_010 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560 Hb_001749_010 Hb_001749_010 Hb_000347_500--Hb_001749_010 Hb_033187_050 Hb_033187_050 Hb_011030_010--Hb_033187_050 Hb_003531_060 Hb_003531_060 Hb_011030_010--Hb_003531_060 Hb_011030_010--Hb_000915_050 Hb_005321_020 Hb_005321_020 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_000283_070 Hb_000283_070 Hb_011030_010--Hb_000283_070 Hb_046931_010--Hb_011030_010 Hb_019813_010 Hb_019813_010 Hb_046931_010--Hb_019813_010 Hb_046931_010--Hb_000531_090 Hb_010193_050 Hb_010193_050 Hb_046931_010--Hb_010193_050 Hb_000787_170 Hb_000787_170 Hb_046931_010--Hb_000787_170 Hb_000755_030 Hb_000755_030 Hb_046931_010--Hb_000755_030 Hb_029921_020 Hb_029921_020 Hb_021420_010--Hb_029921_020 Hb_000453_150 Hb_000453_150 Hb_021420_010--Hb_000453_150 Hb_003388_100 Hb_003388_100 Hb_021420_010--Hb_003388_100 Hb_000062_060 Hb_000062_060 Hb_021420_010--Hb_000062_060 Hb_000193_150 Hb_000193_150 Hb_021420_010--Hb_000193_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.267 22.8846 16.0611 22.5093 15.4176 100.946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0352 17.496 45.1093 18.7524 12.9965

CAGE analysis